RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 MKL1Q969V6 931 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 TCEANC2Q96MN5 208 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 ZNF341Q9BYN7 854 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 DNAJC18Q9H819 358 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 KAT14Q9H8E8 782 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 RBM28Q9NW13 759 aaKnown RBP11.89□□□□□ -0.51
USP39-215ENST00000481409 MTMR4Q9NYA4 1195 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 NYAP2Q9P242 653 aa11.89□□□□□ -0.51
USP39-215ENST00000481409 CTNND1O60716 968 aaKnown RBP11.88□□□□□ -0.51
USP39-215ENST00000481409 ASNSP08243 561 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 TOP1P11387 765 aaKnown RBP11.88□□□□□ -0.51
USP39-215ENST00000481409 KIF5BP33176 963 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 CAP2P40123 477 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 GNAQP50148 359 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 METAP2P50579 478 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP39-215ENST00000481409 HMGN5P82970 282 aaKnown RBP11.88□□□□□ -0.51
USP39-215ENST00000481409 APOBRQ0VD83 1088 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 SLC4A8Q2Y0W8 1093 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 ZNF654Q8IZM8 581 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 LRRC2Q9BYS8 371 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 IL17RBQ9NRM6 502 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 ZNF112Q9UJU3 913 aa11.88□□□□□ -0.51
USP39-215ENST00000481409 CIZ1Q9ULV3 898 aaPredicted RBP11.88□□□□□ -0.51
USP39-215ENST00000481409 GOLGA8BA8MQT2 603 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 POTECB2RU33 542 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 SMIM22K7EJ46 135 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 AKR1B1P15121 316 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 PDCP20941 246 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 SMARCA1P28370 1054 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 EVX2Q03828 476 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 COL9A3Q14050 684 aaPredicted RBP11.87□□□□□ -0.51
USP39-215ENST00000481409 RCSD1Q6JBY9 416 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 KRT26Q7Z3Y9 468 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 CEP95Q96GE4 821 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 LZTS2Q9BRK4 669 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 ZKSCAN3Q9BRR0 538 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 SH2D4AQ9H788 454 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 FOXD4L1Q9NU39 408 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 RBM27Q9P2N5 1060 aaKnown RBP11.87□□□□□ -0.51
USP39-215ENST00000481409 BRPF3Q9ULD4 1205 aa11.87□□□□□ -0.51
USP39-215ENST00000481409 PHF20L1A8MW92 1017 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 MPHOSPH10O00566 681 aaKnown RBP11.86□□□□□ -0.51
USP39-215ENST00000481409 CPLX1O14810 134 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 PPP1R12BO60237 982 aaPredicted RBP11.86□□□□□ -0.51
USP39-215ENST00000481409 TROAPQ12815 778 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 NOL9Q5SY16 702 aaKnown RBP11.86□□□□□ -0.51
USP39-215ENST00000481409 USP48Q86UV5 1035 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 LDHDQ86WU2 507 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 FANCBQ8NB91 859 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 PNMA1Q8ND90 353 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 CTCFLQ8NI51 663 aaPredicted RBP11.86□□□□□ -0.51
USP39-215ENST00000481409 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP39-215ENST00000481409 ARHGEF10LQ9HCE6 1279 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 STX8Q9UNK0 236 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 SMC3Q9UQE7 1217 aa11.86□□□□□ -0.51
USP39-215ENST00000481409 ASTN2O75129 1339 aaPredicted RBP11.86□□□□□ -0.51
USP39-215ENST00000481409 POLR2AP24928 1970 aaKnown RBP11.85□□□□□ -0.51
USP39-215ENST00000481409 GOLGA8AA7E2F4 631 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 ICA1Q05084 483 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 SCRN1Q12765 414 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 RTN1Q16799 776 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 NBPF12Q5TAG4 269 aaPredicted RBP11.85□□□□□ -0.51
USP39-215ENST00000481409 NOL8Q76FK4 1167 aaKnown RBP11.85□□□□□ -0.51
USP39-215ENST00000481409 CCDC83Q8IWF9 413 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 FAM177A1Q8N128 213 aaPredicted RBP11.85□□□□□ -0.51
USP39-215ENST00000481409 GMCL1P1Q8NEA9 526 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 NKX2-3Q8TAU0 364 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 WASF1Q92558 559 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 TMEM47Q9BQJ4 181 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 ZBTB21Q9ULJ3 1066 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 HPS5Q9UPZ3 1129 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 STK36Q9NRP7 1315 aa11.85□□□□□ -0.51
USP39-215ENST00000481409 NMT2O60551 498 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 LARGE1O95461 756 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 GH2P01242 217 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 IFNAR1P17181 557 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 IREB2P48200 963 aaKnown RBP11.84□□□□□ -0.51
USP39-215ENST00000481409 FKBP1BP68106 108 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 NUCB2P80303 420 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 MAP3K11Q16584 847 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 ASPRV1Q53RT3 343 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 EAPPQ56P03 285 aaPredicted RBP11.84□□□□□ -0.51
USP39-215ENST00000481409 GPATCH4Q5T3I0 446 aaKnown RBP11.84□□□□□ -0.51
USP39-215ENST00000481409 MIGA2Q7L4E1 593 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 MICU3Q86XE3 530 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 SCYL3Q8IZE3 742 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 SMARCC2Q8TAQ2 1214 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 KLRG1Q96E93 195 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 AS3MTQ9HBK9 375 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 GPHNQ9NQX3 736 aaPredicted RBP11.84□□□□□ -0.51
USP39-215ENST00000481409 CLIP2Q9UDT6 1046 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 NAP1L2Q9ULW6 460 aaPredicted RBP11.84□□□□□ -0.51
USP39-215ENST00000481409 MYH4Q9Y623 1939 aa11.84□□□□□ -0.51
USP39-215ENST00000481409 DOCK1Q14185 1865 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 USP17L5A8MUK1 530 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 SNHG28P0DPA3 235 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 GUCY1A2P33402 732 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 DDIT3P35638 169 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 STK3Q13188 491 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 GRM4Q14833 912 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms