RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 EMILIN3Q9NT22 766 aa27.23■■□□□ 1.95
TRAF4-211ENST00000478021 OSBPP22059 807 aa27.22■■□□□ 1.95
TRAF4-211ENST00000478021 ARHGEF6Q15052 776 aa27.22■■□□□ 1.95
TRAF4-211ENST00000478021 SBK1Q52WX2 424 aa27.22■■□□□ 1.95
TRAF4-211ENST00000478021 USP17L2Q6R6M4 530 aa27.22■■□□□ 1.95
TRAF4-211ENST00000478021 CLEC10AQ8IUN9 316 aa27.22■■□□□ 1.95
TRAF4-211ENST00000478021 ASCC2Q9H1I8 757 aaPredicted RBP27.22■■□□□ 1.95
TRAF4-211ENST00000478021 PATL2C9JE40 543 aaKnown RBP27.21■■□□□ 1.95
TRAF4-211ENST00000478021 PSMC4P43686 418 aa27.21■■□□□ 1.95
TRAF4-211ENST00000478021 IFNL3Q8IZI9 196 aa27.21■■□□□ 1.95
TRAF4-211ENST00000478021 ANKRD13CQ8N6S4 541 aa27.21■■□□□ 1.95
TRAF4-211ENST00000478021 OSBPL3Q9H4L5 887 aa27.21■■□□□ 1.95
TRAF4-211ENST00000478021 IRX3P78415 501 aaPredicted RBP27.2■■□□□ 1.94
TRAF4-211ENST00000478021 TMEM179Q6ZVK1 233 aa27.2■■□□□ 1.94
TRAF4-211ENST00000478021 FAM227BQ96M60 508 aa27.2■■□□□ 1.94
TRAF4-211ENST00000478021 TAOK2Q9UL54 1235 aa27.2■■□□□ 1.94
TRAF4-211ENST00000478021 FMNL1O95466 1100 aaPredicted RBP27.19■■□□□ 1.94
TRAF4-211ENST00000478021 PDE4AP27815 886 aa27.19■■□□□ 1.94
TRAF4-211ENST00000478021 TRIM47Q96LD4 638 aa27.19■■□□□ 1.94
TRAF4-211ENST00000478021 KIAA1683Q9H0B3 1180 aa27.19■■□□□ 1.94
TRAF4-211ENST00000478021 PTCH2Q9Y6C5 1203 aa27.19■■□□□ 1.94
TRAF4-211ENST00000478021 A0A0D9SFI3 127 aa27.18■■□□□ 1.94
TRAF4-211ENST00000478021 CCDC17Q96LX7 622 aa27.18■■□□□ 1.94
TRAF4-211ENST00000478021 NACAP1Q9BZK3 213 aa27.18■■□□□ 1.94
TRAF4-211ENST00000478021 ROBO3Q96MS0 1386 aa27.18■■□□□ 1.94
TRAF4-211ENST00000478021 A0A1W2PRG0 241 aa27.17■■□□□ 1.94
TRAF4-211ENST00000478021 HOXA7P31268 230 aaPredicted RBP27.17■■□□□ 1.94
TRAF4-211ENST00000478021 USP14P54578 494 aa27.17■■□□□ 1.94
TRAF4-211ENST00000478021 NMIQ13287 307 aaPredicted RBP27.17■■□□□ 1.94
TRAF4-211ENST00000478021 C12orf42Q96LP6 360 aa27.17■■□□□ 1.94
TRAF4-211ENST00000478021 NAPBQ9H115 298 aa27.17■■□□□ 1.94
TRAF4-211ENST00000478021 HELLSQ9NRZ9 838 aa27.17■■□□□ 1.94
TRAF4-211ENST00000478021 FOXP2O15409 715 aa27.16■■□□□ 1.94
TRAF4-211ENST00000478021 SOX10P56693 466 aa27.16■■□□□ 1.94
TRAF4-211ENST00000478021 ICA1Q05084 483 aa27.16■■□□□ 1.94
TRAF4-211ENST00000478021 VPS53Q5VIR6 699 aa27.16■■□□□ 1.94
TRAF4-211ENST00000478021 P2RX7Q99572 595 aaKnown RBP27.16■■□□□ 1.94
TRAF4-211ENST00000478021 VCAM1P19320 739 aa27.15■■□□□ 1.94
TRAF4-211ENST00000478021 FCGRTP55899 365 aa27.15■■□□□ 1.94
TRAF4-211ENST00000478021 FAM110CQ1W6H9 321 aa27.15■■□□□ 1.94
TRAF4-211ENST00000478021 MKNK2Q9HBH9 465 aa27.15■■□□□ 1.94
TRAF4-211ENST00000478021 GREB1LQ9C091 1923 aaPredicted RBP27.14■■□□□ 1.94
TRAF4-211ENST00000478021 PEX10O60683 326 aa27.14■■□□□ 1.94
TRAF4-211ENST00000478021 RASA1P20936 1047 aa27.14■■□□□ 1.94
TRAF4-211ENST00000478021 GCLCP48506 637 aaPredicted RBP27.14■■□□□ 1.94
TRAF4-211ENST00000478021 HERVK_113P62684 666 aa27.14■■□□□ 1.94
TRAF4-211ENST00000478021 MCMDC2Q4G0Z9 681 aa27.14■■□□□ 1.94
TRAF4-211ENST00000478021 ARHGEF10LQ9HCE6 1279 aa27.14■■□□□ 1.94
TRAF4-211ENST00000478021 PRDM1O75626 825 aa27.13■■□□□ 1.93
TRAF4-211ENST00000478021 GNRH1P01148 92 aa27.13■■□□□ 1.93
TRAF4-211ENST00000478021 SDSP20132 328 aa27.13■■□□□ 1.93
TRAF4-211ENST00000478021 ATP2B2Q01814 1243 aa27.13■■□□□ 1.93
TRAF4-211ENST00000478021 SIAH1Q8IUQ4 282 aa27.13■■□□□ 1.93
TRAF4-211ENST00000478021 SRRDQ9UH36 339 aa27.13■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L15C9J2P7 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L13C9JLJ4 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L11C9JVI0 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L18D6R9N7 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L22D6RA61 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L17D6RBQ6 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L19D6RCP7 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L20D6RJB6 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 PPARAQ07869 468 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 USP17L24Q0WX57 530 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 ZNF589Q86UQ0 364 aaPredicted RBP27.12■■□□□ 1.93
TRAF4-211ENST00000478021 RPAP3Q9H6T3 665 aaPredicted RBP27.12■■□□□ 1.93
TRAF4-211ENST00000478021 MYPNQ86TC9 1320 aa27.12■■□□□ 1.93
TRAF4-211ENST00000478021 EEF2P13639 858 aaKnown RBP27.11■■□□□ 1.93
TRAF4-211ENST00000478021 HOXD10P28358 340 aa27.11■■□□□ 1.93
TRAF4-211ENST00000478021 KIAA1755Q5JYT7 1200 aa27.11■■□□□ 1.93
TRAF4-211ENST00000478021 TXNRD2Q9NNW7 524 aa27.11■■□□□ 1.93
TRAF4-211ENST00000478021 GABRQQ9UN88 632 aa27.11■■□□□ 1.93
TRAF4-211ENST00000478021 TNPO2O14787 897 aaKnown RBP27.1■■□□□ 1.93
TRAF4-211ENST00000478021 PRMT2P55345 433 aa27.1■■□□□ 1.93
TRAF4-211ENST00000478021 PRKCZQ05513 592 aa27.1■■□□□ 1.93
TRAF4-211ENST00000478021 SLC9C1Q4G0N8 1177 aa27.1■■□□□ 1.93
TRAF4-211ENST00000478021 CATSPERGQ6ZRH7 1159 aa27.1■■□□□ 1.93
TRAF4-211ENST00000478021 TICAM2Q86XR7 235 aa27.1■■□□□ 1.93
TRAF4-211ENST00000478021 PAGR1Q9BTK6 254 aa27.1■■□□□ 1.93
TRAF4-211ENST00000478021 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.1■■□□□ 1.93
TRAF4-211ENST00000478021 KANSL2Q9H9L4 492 aa27.1■■□□□ 1.93
TRAF4-211ENST00000478021 TMX2Q9Y320 296 aa27.1■■□□□ 1.93
TRAF4-211ENST00000478021 DOCK3Q8IZD9 2030 aa27.09■■□□□ 1.93
TRAF4-211ENST00000478021 CTDSPL2Q05D32 466 aa27.09■■□□□ 1.93
TRAF4-211ENST00000478021 SPICE1Q8N0Z3 855 aa27.09■■□□□ 1.93
TRAF4-211ENST00000478021 SH3TC2Q8TF17 1288 aa27.09■■□□□ 1.93
TRAF4-211ENST00000478021 MORF4L1Q9UBU8 362 aa27.09■■□□□ 1.93
TRAF4-211ENST00000478021 CCDC171Q6TFL3 1326 aa27.09■■□□□ 1.93
TRAF4-211ENST00000478021 GSPT1P15170 499 aaKnown RBP27.08■■□□□ 1.93
TRAF4-211ENST00000478021 TTC22Q5TAA0 569 aa27.08■■□□□ 1.93
TRAF4-211ENST00000478021 POTEEQ6S8J3 1075 aa27.08■■□□□ 1.93
TRAF4-211ENST00000478021 ZNF444Q8N0Y2 327 aaPredicted RBP27.08■■□□□ 1.93
TRAF4-211ENST00000478021 RAET1EQ8TD07 263 aa27.08■■□□□ 1.93
TRAF4-211ENST00000478021 SH2D4AQ9H788 454 aa27.08■■□□□ 1.93
TRAF4-211ENST00000478021 ZNF287Q9HBT7 754 aa27.08■■□□□ 1.93
TRAF4-211ENST00000478021 DIAPH3Q9NSV4 1193 aa27.08■■□□□ 1.93
TRAF4-211ENST00000478021 RBPJLQ9UBG7 517 aa27.08■■□□□ 1.93
TRAF4-211ENST00000478021 HTTP42858 3142 aa27.07■■□□□ 1.92
TRAF4-211ENST00000478021 SLC3A2P08195 630 aaKnown RBP27.07■■□□□ 1.92
TRAF4-211ENST00000478021 PDE4BQ07343 736 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms