RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	GTF3C3	Q9Y5Q9	886 aa		9.15	□□□□□ -0.94
HDAC9-223	ENST00000476135	CYP2B6	P20813	491 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	CCND3	P30281	292 aa	Predicted RBP	9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	CASP7	P55210	303 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	UBE4A	Q14139	1066 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	CWF19L2	Q2TBE0	894 aa	Known RBP	9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	TMEM31	Q5JXX7	168 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	HHIPL2	Q6UWX4	724 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	RDH13	Q8NBN7	331 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	PPM1E	Q8WY54	764 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	BAD	Q92934	168 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	PHOX2B	Q99453	314 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	GAS2L1	Q99501	681 aa	Predicted RBP	9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	NUDT12	Q9BQG2	462 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	CHMP4A	Q9BY43	222 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	ZNF576	Q9H609	170 aa		9.14	□□□□□ -0.95
HDAC9-223	ENST00000476135	TCF20	Q9UGU0	1960 aa	Known RBP	9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	RLF	Q13129	1914 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	MUC6	Q6W4X9	2439 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	MAST3	O60307	1309 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	PI4KAP2	A4QPH2	592 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	PHF20L1	A8MW92	1017 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	PLIN1	O60240	522 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	ZKSCAN1	P17029	563 aa	Predicted RBP	9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	GYG1	P46976	350 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	IFIT5	Q13325	482 aa	Known RBP	9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	GPIHBP1	Q8IV16	184 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	PI4KAP1	Q8N8J0	262 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	SOCS4	Q8WXH5	440 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	RNPC3	Q96LT9	517 aa	Known RBP	9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	SLC6A16	Q9GZN6	736 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	MORF4L1	Q9UBU8	362 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	SUGT1	Q9Y2Z0	365 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	DOCK1	Q14185	1865 aa		9.13	□□□□□ -0.95
HDAC9-223	ENST00000476135	DDX11L8	A8MPP1	907 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	GPR37L1	O60883	481 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	BMP1	P13497	986 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	PABPC4	Q13310	644 aa	Known RBP eCLIP	9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	GCKR	Q14397	625 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	TREML2	Q5T2D2	321 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	LIAT1	Q6ZQX7	453 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	PROCA1	Q8NCQ7	364 aa	Predicted RBP	9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	NECAB3	Q96P71	396 aa	Predicted RBP	9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	EPHX3	Q9H6B9	360 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	CXXC1	Q9P0U4	656 aa	Predicted RBP	9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	ATP11B	Q9Y2G3	1177 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	DOCK2	Q92608	1830 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	LOC285556	D6RIA3	1793 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	ATRNL1	Q5VV63	1379 aa		9.12	□□□□□ -0.95
HDAC9-223	ENST00000476135	TRIM75P	A6NK02	468 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	DNM1L	O00429	736 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	MSC	O60682	206 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	MRE11	P49959	708 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	TCP10	Q12799	353 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	NEUROD2	Q15784	382 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	CCDC30	Q5VVM6	783 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	LDHAL6A	Q6ZMR3	332 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	FBXO33	Q7Z6M2	555 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	ZNF598	Q86UK7	904 aa	Known RBP	9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	LPAR1	Q92633	364 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	USP6NL	Q92738	828 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	TIFA	Q96CG3	184 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	SPSB2	Q99619	263 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	PRDM5	Q9NQX1	630 aa	Predicted RBP	9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	MBIP	Q9NS73	344 aa		9.11	□□□□□ -0.95
HDAC9-223	ENST00000476135	CTNND1	O60716	968 aa	Known RBP	9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	RGS2	P41220	211 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	MAP3K10	Q02779	954 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	FUT2	Q10981	343 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	CHAF1A	Q13111	956 aa	Predicted RBP	9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	SNX17	Q15036	470 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	PLA2G2C	Q5R387	149 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	MORN1	Q5T089	497 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	SLC39A5	Q6ZMH5	540 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	MYH16	Q9H6N6	1097 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	PDLIM7	Q9NR12	457 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	CNNM1	Q9NRU3	951 aa		9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	LRRFIP2	Q9Y608	721 aa	Known RBP	9.1	□□□□□ -0.95
HDAC9-223	ENST00000476135	TRIM43B	A6NCK2	446 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	ELL2	O00472	640 aa	Predicted RBP	9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	FRAT2	O75474	233 aa	Predicted RBP	9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	ZNF853	P0CG23	659 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	MAPK4	P31152	587 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	GCGR	P47871	477 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	FOXO4	P98177	505 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	NFIA	Q12857	509 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	CCDC85B	Q15834	202 aa	Predicted RBP	9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	AAK1	Q2M2I8	961 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	CDC42EP5	Q6NZY7	148 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	VPS37D	Q86XT2	251 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	TRIM43	Q96BQ3	446 aa	Predicted RBP	9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	APBA2	Q99767	749 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	ASCC2	Q9H1I8	757 aa	Predicted RBP	9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	PRDM12	Q9H4Q4	367 aa		9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	DDX20	Q9UHI6	824 aa	Known RBP	9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	9.09	□□□□□ -0.95
HDAC9-223	ENST00000476135	EPHB4	P54760	987 aa		9.08	□□□□□ -0.96
HDAC9-223	ENST00000476135	ADGRE1	Q14246	886 aa		9.08	□□□□□ -0.96

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