RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 PSME4Q14997 1843 aa11.31□□□□□ -0.6
USP39-214ENST00000474572 GRM4Q14833 912 aa11.31□□□□□ -0.6
USP39-214ENST00000474572 FAM47AQ5JRC9 791 aa11.31□□□□□ -0.6
USP39-214ENST00000474572 C16orf86Q6ZW13 317 aa11.31□□□□□ -0.6
USP39-214ENST00000474572 AMOTL1Q8IY63 956 aa11.31□□□□□ -0.6
USP39-214ENST00000474572 ZNF579Q8NAF0 562 aaKnown RBP11.31□□□□□ -0.6
USP39-214ENST00000474572 CTCFLQ8NI51 663 aaPredicted RBP11.31□□□□□ -0.6
USP39-214ENST00000474572 KIAA1468Q9P260 1216 aa11.31□□□□□ -0.6
USP39-214ENST00000474572 TUBE1Q9UJT0 475 aa11.31□□□□□ -0.6
USP39-214ENST00000474572 FBXO2Q9UK22 296 aaPredicted RBP11.31□□□□□ -0.6
USP39-214ENST00000474572 FLT1P17948 1338 aa11.31□□□□□ -0.6
USP39-214ENST00000474572 NMT2O60551 498 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 APBA3O96018 575 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 TPM3P06753 285 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 RASA1P20936 1047 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 MARCKSP29966 332 aaPredicted RBP11.3□□□□□ -0.6
USP39-214ENST00000474572 CDC25BP30305 580 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 ALDH1B1P30837 517 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 KIF5BP33176 963 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 KRT2P35908 639 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 PDE6BP35913 854 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 TFAP4Q01664 338 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 AKAP17AQ02040 695 aaKnown RBP11.3□□□□□ -0.6
USP39-214ENST00000474572 NR5A1Q13285 461 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 PFKFB3Q16875 520 aaPredicted RBP11.3□□□□□ -0.6
USP39-214ENST00000474572 MFSD14BQ5SR56 506 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 AEBP2Q6ZN18 517 aaPredicted RBP11.3□□□□□ -0.6
USP39-214ENST00000474572 FAM177A1Q8N128 213 aaPredicted RBP11.3□□□□□ -0.6
USP39-214ENST00000474572 KRI1Q8N9T8 703 aaKnown RBP11.3□□□□□ -0.6
USP39-214ENST00000474572 OXER1Q8TDS5 423 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 TGFBRAP1Q8WUH2 860 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 SRPRBQ9Y5M8 271 aaKnown RBP11.3□□□□□ -0.6
USP39-214ENST00000474572 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.3□□□□□ -0.62e-8■■■□□ 16.1
USP39-214ENST00000474572 SIPA1L1O43166 1804 aa11.3□□□□□ -0.6
USP39-214ENST00000474572 SCG2P13521 617 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 SYKP43405 635 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 PLCD1P51178 756 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 ZNF75DP51815 510 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 NLRP12P59046 1061 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 DHX40Q8IX18 779 aaKnown RBP11.29□□□□□ -0.6
USP39-214ENST00000474572 TEX11Q8IYF3 940 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 CCDC82Q8N4S0 544 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 NEDD1Q8NHV4 660 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 DYNLL2Q96FJ2 89 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 MASTLQ96GX5 879 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 SDF4Q9BRK5 362 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 KAT14Q9H8E8 782 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 ZNF287Q9HBT7 754 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 SH3GLB2Q9NR46 395 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 VPS54Q9P1Q0 977 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 CEP131Q9UPN4 1083 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 DAGLAQ9Y4D2 1042 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 V9GY48 417 aaPredicted RBP11.29□□□□□ -0.6
USP39-214ENST00000474572 MYO3BQ8WXR4 1341 aa11.29□□□□□ -0.6
USP39-214ENST00000474572 C6orf229H3BNL8 230 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 BMP15O95972 392 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 PTMAP06454 111 aaKnown RBP11.28□□□□□ -0.6
USP39-214ENST00000474572 MMP10P09238 476 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 GNAQP50148 359 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 FKBP1AP62942 108 aaKnown RBP11.28□□□□□ -0.6
USP39-214ENST00000474572 GABPAQ06546 454 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 MAPKAPK5Q8IW41 473 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 CEP57L1Q8IYX8 460 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 MPNDQ8N594 471 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 PNMA1Q8ND90 353 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 MAD2L2Q9UI95 211 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 PCDHB6Q9Y5E3 794 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 PARP3Q9Y6F1 533 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 SLX4Q8IY92 1834 aa11.28□□□□□ -0.6
USP39-214ENST00000474572 PALM3A6NDB9 673 aaPredicted RBP11.27□□□□□ -0.61
USP39-214ENST00000474572 GOLGA6L6A8MZA4 724 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 OFD1O75665 1012 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 TRAPPC10P48553 1259 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 CDK8P49336 464 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 GTF2IP78347 998 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 EARS2Q5JPH6 523 aaKnown RBP11.27□□□□□ -0.61
USP39-214ENST00000474572 STYK1Q6J9G0 422 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 KRBA2Q6ZNG9 492 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 ZNF444Q8N0Y2 327 aaPredicted RBP11.27□□□□□ -0.61
USP39-214ENST00000474572 CERS5Q8N5B7 392 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 DAGLBQ8NCG7 672 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 SLC44A5Q8NCS7 719 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 MRFAP1L1Q96HT8 127 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 CLIC6Q96NY7 704 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 MKNK2Q9HBH9 465 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 BRMS1Q9HCU9 246 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 CABP5Q9NP86 173 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 SCN9AQ15858 1988 aa11.27□□□□□ -0.61
USP39-214ENST00000474572 IGKV6D-41A0A0C4DH26 115 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 USP17L3A6NCW0 530 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 USP17L4A6NCW7 530 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 FAM205CA6NFA0 338 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 TRIM75PA6NK02 468 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 GOLGA6L19H0YKK7 550 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 M0R2N6 131 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 IKBKBO14920 756 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 TSPY3P0CV98 308 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 TSPY8P0CW00 308 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 SMARCA1P28370 1054 aa11.26□□□□□ -0.61
USP39-214ENST00000474572 MDM2Q00987 491 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms