RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 KANSL2Q9H9L4 492 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 CTNNA3Q9UI47 895 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 SLC45A1Q9Y2W3 748 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 BAZ2AQ9UIF9 1905 aaKnown RBP16.34■□□□□ 0.21
USF1-205ENST00000473969 RAD50Q92878 1312 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 ROBO3Q96MS0 1386 aa16.34■□□□□ 0.21
USF1-205ENST00000473969 SMIM22K7EJ46 135 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 TLR2O60603 784 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 PRDM1O75626 825 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 MOGSQ13724 837 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 ARHGEF6Q15052 776 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 ZYXQ15942 572 aaKnown RBP16.33■□□□□ 0.2
USF1-205ENST00000473969 BMP2KLQ5H9B9 411 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 GPAT2Q6NUI2 795 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 CASC1Q6TDU7 716 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 SMCR8Q8TEV9 937 aaPredicted RBP16.33■□□□□ 0.2
USF1-205ENST00000473969 ZNF296Q8WUU4 475 aaPredicted RBP16.33■□□□□ 0.2
USF1-205ENST00000473969 DSCC1Q9BVC3 393 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 KIAA1683Q9H0B3 1180 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 TOMM22Q9NS69 142 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 PCNTO95613 3336 aa16.33■□□□□ 0.2
USF1-205ENST00000473969 ZNF213O14771 459 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 ZMYM6O95789 1325 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 TSPY3P0CV98 308 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 TSPY8P0CW00 308 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 RASA1P20936 1047 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 GUCY1A2P33402 732 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 IRX3P78415 501 aaPredicted RBP16.32■□□□□ 0.2
USF1-205ENST00000473969 SP3Q02447 781 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 CTDSPL2Q05D32 466 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 KIF22Q14807 665 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 TNS4Q8IZW8 715 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 ERO1AQ96HE7 468 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 R3HDMLQ9H3Y0 253 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 ANAPC4Q9UJX5 808 aa16.32■□□□□ 0.2
USF1-205ENST00000473969 TSPY2A6NKD2 308 aa16.31■□□□□ 0.2
USF1-205ENST00000473969 FOXP2O15409 715 aa16.31■□□□□ 0.2
USF1-205ENST00000473969 PPP4R3BQ5MIZ7 849 aa16.31■□□□□ 0.2
USF1-205ENST00000473969 TREML2Q5T2D2 321 aa16.31■□□□□ 0.2
USF1-205ENST00000473969 KIAA1211Q6ZU35 1233 aa16.31■□□□□ 0.2
USF1-205ENST00000473969 SKAP1Q86WV1 359 aa16.31■□□□□ 0.2
USF1-205ENST00000473969 ACER1Q8TDN7 264 aa16.31■□□□□ 0.2
USF1-205ENST00000473969 RNF41Q9H4P4 317 aaPredicted RBP16.31■□□□□ 0.2
USF1-205ENST00000473969 ATAD5Q96QE3 1844 aa16.31■□□□□ 0.2
USF1-205ENST00000473969 RAD21O60216 631 aa16.3■□□□□ 0.2
USF1-205ENST00000473969 RANBP6O60518 1105 aaKnown RBP16.3■□□□□ 0.2
USF1-205ENST00000473969 CYP2C8P10632 490 aa16.3■□□□□ 0.2
USF1-205ENST00000473969 HAND2P61296 217 aa16.3■□□□□ 0.2
USF1-205ENST00000473969 TFAP4Q01664 338 aa16.3■□□□□ 0.2
USF1-205ENST00000473969 IMMTQ16891 758 aaKnown RBP16.3■□□□□ 0.2
USF1-205ENST00000473969 RRP12Q5JTH9 1297 aaKnown RBP16.3■□□□□ 0.2
USF1-205ENST00000473969 MFSD6Q6ZSS7 791 aa16.3■□□□□ 0.2
USF1-205ENST00000473969 EMILIN3Q9NT22 766 aa16.3■□□□□ 0.2
USF1-205ENST00000473969 LAMB1P07942 1786 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L15C9J2P7 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L13C9JLJ4 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L11C9JVI0 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L18D6R9N7 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L22D6RA61 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L17D6RBQ6 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L19D6RCP7 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L20D6RJB6 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 PCP11498 1178 aaKnown RBP16.29■□□□□ 0.2
USF1-205ENST00000473969 USP17L24Q0WX57 530 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 DGKZQ13574 1117 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 C12orf42Q96LP6 360 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 GOPCQ9HD26 462 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 CPA4Q9UI42 421 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 TMX2Q9Y320 296 aa16.29■□□□□ 0.2
USF1-205ENST00000473969 SGSM2O43147 1006 aa16.28■□□□□ 0.2
USF1-205ENST00000473969 EEF2P13639 858 aaKnown RBP16.28■□□□□ 0.2
USF1-205ENST00000473969 HOXA7P31268 230 aaPredicted RBP16.28■□□□□ 0.2
USF1-205ENST00000473969 GCLCP48506 637 aaPredicted RBP16.28■□□□□ 0.2
USF1-205ENST00000473969 FAM47AQ5JRC9 791 aa16.28■□□□□ 0.2
USF1-205ENST00000473969 CTU1Q7Z7A3 348 aaKnown RBP16.28■□□□□ 0.2
USF1-205ENST00000473969 NEDD1Q8NHV4 660 aa16.28■□□□□ 0.2
USF1-205ENST00000473969 LPAR1Q92633 364 aa16.28■□□□□ 0.2
USF1-205ENST00000473969 ASCC2Q9H1I8 757 aaPredicted RBP16.28■□□□□ 0.2
USF1-205ENST00000473969 NYAP2Q9P242 653 aa16.28■□□□□ 0.2
USF1-205ENST00000473969 CLIP2Q9UDT6 1046 aa16.28■□□□□ 0.2
USF1-205ENST00000473969 PHIPQ8WWQ0 1821 aa16.27■□□□□ 0.2
USF1-205ENST00000473969 A0A1W2PRG0 241 aa16.27■□□□□ 0.2
USF1-205ENST00000473969 ORC4O43929 436 aa16.27■□□□□ 0.2
USF1-205ENST00000473969 AKNAD1Q5T1N1 836 aa16.27■□□□□ 0.2
USF1-205ENST00000473969 C17orf99Q6UX52 265 aa16.27■□□□□ 0.2
USF1-205ENST00000473969 CLEC10AQ8IUN9 316 aa16.27■□□□□ 0.2
USF1-205ENST00000473969 CD99L2Q8TCZ2 262 aa16.27■□□□□ 0.2
USF1-205ENST00000473969 GTF3C2Q8WUA4 911 aaPredicted RBP16.27■□□□□ 0.2
USF1-205ENST00000473969 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.27■□□□□ 0.2
USF1-205ENST00000473969 U3KPZ7 1027 aaPredicted RBP16.27■□□□□ 0.2
USF1-205ENST00000473969 CDC45O75419 566 aa16.26■□□□□ 0.19
USF1-205ENST00000473969 TTLL1O95922 423 aa16.26■□□□□ 0.19
USF1-205ENST00000473969 VCAM1P19320 739 aa16.26■□□□□ 0.19
USF1-205ENST00000473969 NT5C2P49902 561 aa16.26■□□□□ 0.19
USF1-205ENST00000473969 PKN2Q16513 984 aaKnown RBP16.26■□□□□ 0.19
USF1-205ENST00000473969 STAG1Q8WVM7 1258 aa16.26■□□□□ 0.19
USF1-205ENST00000473969 ESR2Q92731 530 aa16.26■□□□□ 0.19
USF1-205ENST00000473969 ESYT1Q9BSJ8 1104 aa16.26■□□□□ 0.19
USF1-205ENST00000473969 TANGO6Q9C0B7 1094 aa16.26■□□□□ 0.19
USF1-205ENST00000473969 RPAP3Q9H6T3 665 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms