RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 COL13A1Q5TAT6 717 aaPredicted RBP13.88□□□□□ -0.19
CUX1-207ENST00000465461 ANKRD23Q86SG2 305 aa13.88□□□□□ -0.19
CUX1-207ENST00000465461 ZNF444Q8N0Y2 327 aaPredicted RBP13.88□□□□□ -0.19
CUX1-207ENST00000465461 NKX2-3Q8TAU0 364 aa13.88□□□□□ -0.19
CUX1-207ENST00000465461 NBPF3Q9H094 633 aa13.88□□□□□ -0.19
CUX1-207ENST00000465461 EMILIN3Q9NT22 766 aa13.88□□□□□ -0.19
CUX1-207ENST00000465461 GINM1Q9NU53 330 aa13.88□□□□□ -0.19
CUX1-207ENST00000465461 CASP8AP2Q9UKL3 1982 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 GPR25O00155 361 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 ATP2B2Q01814 1243 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 SH3D19Q5HYK7 790 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 TMEM179Q6ZVK1 233 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 FASTKD5Q7L8L6 764 aaKnown RBP13.87□□□□□ -0.19
CUX1-207ENST00000465461 ZNF296Q8WUU4 475 aaPredicted RBP13.87□□□□□ -0.19
CUX1-207ENST00000465461 RUFY2Q8WXA3 655 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 CCDC17Q96LX7 622 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 FEZ1Q99689 392 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 TBC1D2Q9BYX2 928 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 ZFYVE28Q9HCC9 887 aa13.87□□□□□ -0.19
CUX1-207ENST00000465461 SGSM2O43147 1006 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 SLC3A2P08195 630 aaKnown RBP13.86□□□□□ -0.19
CUX1-207ENST00000465461 EEF2P13639 858 aaKnown RBP13.86□□□□□ -0.19
CUX1-207ENST00000465461 TFAP4Q01664 338 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 ICA1Q05084 483 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 PDE4BQ07343 736 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 RRP12Q5JTH9 1297 aaKnown RBP13.86□□□□□ -0.19
CUX1-207ENST00000465461 KIAA1755Q5JYT7 1200 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 TBC1D10CQ8IV04 446 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 DSCC1Q9BVC3 393 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 TOMM22Q9NS69 142 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 TMOD4Q9NZQ9 345 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 CPA4Q9UI42 421 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 ANAPC4Q9UJX5 808 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 AGTPBP1Q9UPW5 1226 aa13.86□□□□□ -0.19
CUX1-207ENST00000465461 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.86□□□□□ -0.19
CUX1-207ENST00000465461 C19orf81C9J6K1 198 aa13.85□□□□□ -0.19
CUX1-207ENST00000465461 NMT2O60551 498 aa13.85□□□□□ -0.19
CUX1-207ENST00000465461 CAP1Q01518 475 aa13.85□□□□□ -0.19
CUX1-207ENST00000465461 USP17L2Q6R6M4 530 aa13.85□□□□□ -0.19
CUX1-207ENST00000465461 PROCA1Q8NCQ7 364 aaPredicted RBP13.85□□□□□ -0.19
CUX1-207ENST00000465461 ESYT1Q9BSJ8 1104 aa13.85□□□□□ -0.19
CUX1-207ENST00000465461 CFHR5Q9BXR6 569 aa13.85□□□□□ -0.19
CUX1-207ENST00000465461 PRDM10Q9NQV6 1147 aa13.85□□□□□ -0.19
CUX1-207ENST00000465461 RAD50Q92878 1312 aa13.85□□□□□ -0.19
CUX1-207ENST00000465461 LOC285556D6RIA3 1793 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 ZNF213O14771 459 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 RAD21O60216 631 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 RANBP6O60518 1105 aaKnown RBP13.84□□□□□ -0.19
CUX1-207ENST00000465461 PEX10O60683 326 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 TSPY3P0CV98 308 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 TSPY8P0CW00 308 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 SPICE1Q8N0Z3 855 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 CHMP4CQ96CF2 233 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 KIAA1683Q9H0B3 1180 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 KANSL2Q9H9L4 492 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 ZNF287Q9HBT7 754 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 TAOK2Q9UL54 1235 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 ZMYM6O95789 1325 aa13.84□□□□□ -0.19
CUX1-207ENST00000465461 IGKV6D-41A0A0C4DH26 115 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 TSPY2A6NKD2 308 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 TLR2O60603 784 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 FKTNO75072 461 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 AKNAD1Q5T1N1 836 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 NEDD1Q8NHV4 660 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 CEP95Q96GE4 821 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 PARK7Q99497 189 aaKnown RBP13.83□□□□□ -0.2
CUX1-207ENST00000465461 ASCC2Q9H1I8 757 aaPredicted RBP13.83□□□□□ -0.2
CUX1-207ENST00000465461 ARHGEF10LQ9HCE6 1279 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 ZCCHC17Q9NP64 241 aaKnown RBP13.83□□□□□ -0.2
CUX1-207ENST00000465461 CLIP2Q9UDT6 1046 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 TMX2Q9Y320 296 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 TAF6LQ9Y6J9 622 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 GREB1LQ9C091 1923 aaPredicted RBP13.83□□□□□ -0.2
CUX1-207ENST00000465461 NEDD4P46934 1319 aa13.83□□□□□ -0.2
CUX1-207ENST00000465461 CDC45O75419 566 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 FGRP09769 529 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 VCAM1P19320 739 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 OSBPP22059 807 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 USP14P54578 494 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 C17orf99Q6UX52 265 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 MFSD6Q6ZSS7 791 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 LRRC47Q8N1G4 583 aaKnown RBP13.82□□□□□ -0.2
CUX1-207ENST00000465461 CD99L2Q8TCZ2 262 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 STAG1Q8WVM7 1258 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 P2RX7Q99572 595 aaKnown RBP13.82□□□□□ -0.2
CUX1-207ENST00000465461 LSG1Q9H089 658 aaKnown RBP13.82□□□□□ -0.2
CUX1-207ENST00000465461 RPAP3Q9H6T3 665 aaPredicted RBP13.82□□□□□ -0.2
CUX1-207ENST00000465461 IL17RBQ9NRM6 502 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 ADGRA2Q96PE1 1338 aa13.82□□□□□ -0.2
CUX1-207ENST00000465461 ORC4O43929 436 aa13.81□□□□□ -0.2
CUX1-207ENST00000465461 IRX3P78415 501 aaPredicted RBP13.81□□□□□ -0.2
CUX1-207ENST00000465461 SP3Q02447 781 aa13.81□□□□□ -0.2
CUX1-207ENST00000465461 IMMTQ16891 758 aaKnown RBP13.81□□□□□ -0.2
CUX1-207ENST00000465461 POTEEQ6S8J3 1075 aa13.81□□□□□ -0.2
CUX1-207ENST00000465461 SAMD1Q6SPF0 538 aaPredicted RBP13.81□□□□□ -0.2
CUX1-207ENST00000465461 ANKRD13CQ8N6S4 541 aa13.81□□□□□ -0.2
CUX1-207ENST00000465461 SMCR8Q8TEV9 937 aaPredicted RBP13.81□□□□□ -0.2
CUX1-207ENST00000465461 C12orf42Q96LP6 360 aa13.81□□□□□ -0.2
CUX1-207ENST00000465461 ZKSCAN3Q9BRR0 538 aa13.81□□□□□ -0.2
CUX1-207ENST00000465461 ARHGAP39Q9C0H5 1083 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms