RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	FAM47A	Q5JRC9	791 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	INTS5	Q6P9B9	1019 aa	Known RBP	13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	SYCP3	Q8IZU3	236 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	NSUN7	Q8NE18	718 aa	Known RBP	13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	UBA5	Q9GZZ9	404 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	RTEL1	Q9NZ71	1219 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	ICA1	Q05084	483 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	CNNM4	Q6P4Q7	775 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	HS2ST1	Q7LGA3	356 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	PHKB	Q93100	1093 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	KDM3A	Q9Y4C1	1321 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	CHD2	O14647	1828 aa	Known RBP	13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	CMA1	P23946	247 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	CETN2	P41208	172 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	ZNF174	Q15697	407 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	ABCB5	Q2M3G0	1257 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	MCF2L2	Q86YR7	1114 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	TRIML1	Q8N9V2	468 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	RGS22	Q8NE09	1264 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	KIF18A	Q8NI77	898 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	BRPF3	Q9ULD4	1205 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	KCNQ4	P56696	695 aa		13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	NUP88	Q99567	741 aa	Predicted RBP	13.29	□□□□□ -0.28
RBM39-223	ENST00000463004	VWA3A	A6NCI4	1184 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	PRPF3	O43395	683 aa	Known RBP	13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	PPP6R2	O75170	966 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	RUFY1	Q96T51	708 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	ZNF609	O15014	1411 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	MMP14	P50281	582 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	USP14	P54578	494 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	TMC6	Q7Z403	805 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	POLR3E	Q9NVU0	708 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	KRT13	P13646	458 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	SUPT20HL1	Q3ZLR7	823 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	TEX35	Q5T0J7	233 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	DHX37	Q8IY37	1157 aa	Known RBP	13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	TAF4B	Q92750	862 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	IQCD	Q96DY2	449 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	SH3GLB2	Q9NR46	395 aa		13.28	□□□□□ -0.28
RBM39-223	ENST00000463004	MROH7-TTC4	A0A0A0MT08	1334 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	SMCO2	A6NFE2	343 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	ERLIN1	O75477	346 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	GCFC2	P16383	781 aa	Known RBP	13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	ADD1	P35611	737 aa	Known RBP	13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	TCP10	Q12799	353 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	CCDC181	Q5TID7	509 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	CIAPIN1	Q6FI81	312 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	STYK1	Q6J9G0	422 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	FAM84B	Q96KN1	310 aa	Predicted RBP	13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	MYL10	Q9BUA6	226 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	DNAJC25	Q9H1X3	360 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	CUEDC2	Q9H467	287 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	CSAD	Q9Y600	493 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	PIK3C2A	O00443	1686 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	MED1	Q15648	1581 aa	Predicted RBP	13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	ORC4	O43929	436 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	ERLIN2	O94905	339 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	FAM13A	O94988	1023 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	HSP90B2P	Q58FF3	399 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	ATP6V0A2	Q9Y487	856 aa		13.27	□□□□□ -0.28
RBM39-223	ENST00000463004	TRIM14	Q14142	442 aa		13.27	□□□□□ -0.29
RBM39-223	ENST00000463004	SLFN13	Q68D06	897 aa		13.27	□□□□□ -0.29
RBM39-223	ENST00000463004	PRR5L	Q6MZQ0	368 aa		13.27	□□□□□ -0.29
RBM39-223	ENST00000463004	ZNF202	O95125	648 aa		13.27	□□□□□ -0.29
RBM39-223	ENST00000463004	IFI16	Q16666	785 aa	Known RBP	13.27	□□□□□ -0.29
RBM39-223	ENST00000463004	CCDC125	Q86Z20	511 aa		13.27	□□□□□ -0.29
RBM39-223	ENST00000463004	SLFN12	Q8IYM2	578 aa		13.27	□□□□□ -0.29
RBM39-223	ENST00000463004	DYNLL1	P63167	89 aa	Known RBP	13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	PI16	Q6UXB8	463 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	AOPEP	Q8N6M6	819 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	LRWD1	Q9UFC0	647 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004		A0A1B0GVL5	298 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	JAKMIP3	Q5VZ66	844 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	CCDC174	Q6PII3	467 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	KRT26	Q7Z3Y9	468 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	TIGD1	Q96MW7	591 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	CYLC1	P35663	651 aa	Predicted RBP	13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	LONP1	P36776	959 aa	Known RBP	13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	NLRP12	P59046	1061 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	CALCRL	Q16602	461 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	GBP3	Q9H0R5	595 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	TAOK3	Q9H2K8	898 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	VPS54	Q9P1Q0	977 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	ZSWIM5	Q9P217	1185 aa		13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	PDS5A	Q29RF7	1337 aa	Known RBP	13.26	□□□□□ -0.29
RBM39-223	ENST00000463004	CCNT1	O60563	726 aa	Known RBP	13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	MCM3	P25205	808 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	SCNN1D	P51172	638 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	ORC2	Q13416	577 aa	Predicted RBP	13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	NEK8	Q86SG6	692 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	FBXO11	Q86XK2	927 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	AK8	Q96MA6	479 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	SCLT1	Q96NL6	688 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	AMN	Q9BXJ7	453 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	SBK1	Q52WX2	424 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	FAM160B2	Q86V87	743 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	CCT6A	P40227	531 aa	Known RBP	13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	SGMS1	Q86VZ5	419 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	SLC39A14	Q15043	492 aa		13.25	□□□□□ -0.29

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