RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 FAM227BQ96M60 508 aa22.34■■□□□ 1.17
USP39-209ENST00000458268 NAPBQ9H115 298 aa22.34■■□□□ 1.17
USP39-209ENST00000458268 ADGRA2Q96PE1 1338 aa22.33■■□□□ 1.17
USP39-209ENST00000458268 MGAMO43451 1857 aa22.33■■□□□ 1.17
USP39-209ENST00000458268 PATL2C9JE40 543 aaKnown RBP22.33■■□□□ 1.17
USP39-209ENST00000458268 NMIQ13287 307 aaPredicted RBP22.33■■□□□ 1.17
USP39-209ENST00000458268 IFNL3Q8IZI9 196 aa22.33■■□□□ 1.17
USP39-209ENST00000458268 ANKRD13CQ8N6S4 541 aa22.33■■□□□ 1.17
USP39-209ENST00000458268 ASCC2Q9H1I8 757 aaPredicted RBP22.33■■□□□ 1.17
USP39-209ENST00000458268 MKNK2Q9HBH9 465 aa22.33■■□□□ 1.17
USP39-209ENST00000458268 SLC45A1Q9Y2W3 748 aa22.33■■□□□ 1.17
USP39-209ENST00000458268 A0A0D9SFI3 127 aa22.32■■□□□ 1.16
USP39-209ENST00000458268 RAD21O60216 631 aa22.32■■□□□ 1.16
USP39-209ENST00000458268 PDE4AP27815 886 aa22.32■■□□□ 1.16
USP39-209ENST00000458268 GUCY1A2P33402 732 aa22.32■■□□□ 1.16
USP39-209ENST00000458268 PSMC4P43686 418 aa22.32■■□□□ 1.16
USP39-209ENST00000458268 TMEM179Q6ZVK1 233 aa22.32■■□□□ 1.16
USP39-209ENST00000458268 EMILIN3Q9NT22 766 aa22.32■■□□□ 1.16
USP39-209ENST00000458268 PRDM1O75626 825 aa22.31■■□□□ 1.16
USP39-209ENST00000458268 SOX10P56693 466 aa22.31■■□□□ 1.16
USP39-209ENST00000458268 ICA1Q05084 483 aa22.31■■□□□ 1.16
USP39-209ENST00000458268 GIMAP6Q6P9H5 292 aa22.31■■□□□ 1.16
USP39-209ENST00000458268 PTPN22Q9Y2R2 807 aa22.31■■□□□ 1.16
USP39-209ENST00000458268 BCRP11274 1271 aa22.3■■□□□ 1.16
USP39-209ENST00000458268 USP14P54578 494 aa22.3■■□□□ 1.16
USP39-209ENST00000458268 SBK1Q52WX2 424 aa22.3■■□□□ 1.16
USP39-209ENST00000458268 SAMD1Q6SPF0 538 aaPredicted RBP22.3■■□□□ 1.16
USP39-209ENST00000458268 TRIM47Q96LD4 638 aa22.3■■□□□ 1.16
USP39-209ENST00000458268 PAGR1Q9BTK6 254 aa22.3■■□□□ 1.16
USP39-209ENST00000458268 PTCH2Q9Y6C5 1203 aa22.3■■□□□ 1.16
USP39-209ENST00000458268 MYCP01106 439 aaPredicted RBP22.29■■□□□ 1.16
USP39-209ENST00000458268 CTGFP29279 349 aa22.29■■□□□ 1.16
USP39-209ENST00000458268 VPS53Q5VIR6 699 aa22.29■■□□□ 1.16
USP39-209ENST00000458268 CCDC17Q96LX7 622 aa22.29■■□□□ 1.16
USP39-209ENST00000458268 ARHGEF10LQ9HCE6 1279 aa22.29■■□□□ 1.16
USP39-209ENST00000458268 HELLSQ9NRZ9 838 aa22.29■■□□□ 1.16
USP39-209ENST00000458268 DIAPH3Q9NSV4 1193 aa22.29■■□□□ 1.16
USP39-209ENST00000458268 TAOK2Q9UL54 1235 aa22.29■■□□□ 1.16
USP39-209ENST00000458268 PEX10O60683 326 aa22.28■■□□□ 1.16
USP39-209ENST00000458268 FCGRTP55899 365 aa22.28■■□□□ 1.16
USP39-209ENST00000458268 MCMDC2Q4G0Z9 681 aa22.28■■□□□ 1.16
USP39-209ENST00000458268 P2RX7Q99572 595 aaKnown RBP22.28■■□□□ 1.16
USP39-209ENST00000458268 KIAA1683Q9H0B3 1180 aa22.28■■□□□ 1.16
USP39-209ENST00000458268 OSBPL3Q9H4L5 887 aa22.28■■□□□ 1.16
USP39-209ENST00000458268 A0A1W2PRG0 241 aa22.27■■□□□ 1.16
USP39-209ENST00000458268 VCAM1P19320 739 aa22.27■■□□□ 1.16
USP39-209ENST00000458268 SDSP20132 328 aa22.27■■□□□ 1.16
USP39-209ENST00000458268 CTDSPL2Q05D32 466 aa22.27■■□□□ 1.16
USP39-209ENST00000458268 PPARAQ07869 468 aa22.27■■□□□ 1.16
USP39-209ENST00000458268 RPAP3Q9H6T3 665 aaPredicted RBP22.27■■□□□ 1.16
USP39-209ENST00000458268 TNPO2O14787 897 aaKnown RBP22.26■■□□□ 1.15
USP39-209ENST00000458268 SLC3A2P08195 630 aaKnown RBP22.26■■□□□ 1.15
USP39-209ENST00000458268 RASA1P20936 1047 aa22.26■■□□□ 1.15
USP39-209ENST00000458268 GCLCP48506 637 aaPredicted RBP22.26■■□□□ 1.15
USP39-209ENST00000458268 HERVK_113P62684 666 aa22.26■■□□□ 1.15
USP39-209ENST00000458268 CWC27Q6UX04 472 aaKnown RBP22.26■■□□□ 1.15
USP39-209ENST00000458268 ZNF589Q86UQ0 364 aaPredicted RBP22.26■■□□□ 1.15
USP39-209ENST00000458268 ZNF444Q8N0Y2 327 aaPredicted RBP22.26■■□□□ 1.15
USP39-209ENST00000458268 SPICE1Q8N0Z3 855 aa22.26■■□□□ 1.15
USP39-209ENST00000458268 TANGO6Q9C0B7 1094 aa22.26■■□□□ 1.15
USP39-209ENST00000458268 MYPNQ86TC9 1320 aa22.26■■□□□ 1.15
USP39-209ENST00000458268 ROBO3Q96MS0 1386 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L15C9J2P7 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L13C9JLJ4 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L11C9JVI0 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L18D6R9N7 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L22D6RA61 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L17D6RBQ6 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L19D6RCP7 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L20D6RJB6 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 EEF2P13639 858 aaKnown RBP22.25■■□□□ 1.15
USP39-209ENST00000458268 HOXD10P28358 340 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 USP17L24Q0WX57 530 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 SLC9C1Q4G0N8 1177 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 RAET1EQ8TD07 263 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 SH2D4AQ9H788 454 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 ZNF287Q9HBT7 754 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 TOMM22Q9NS69 142 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 MYH4Q9Y623 1939 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 CCDC171Q6TFL3 1326 aa22.25■■□□□ 1.15
USP39-209ENST00000458268 HOXA7P31268 230 aaPredicted RBP22.24■■□□□ 1.15
USP39-209ENST00000458268 PDE4BQ07343 736 aa22.24■■□□□ 1.15
USP39-209ENST00000458268 FAM110CQ1W6H9 321 aa22.24■■□□□ 1.15
USP39-209ENST00000458268 TTC22Q5TAA0 569 aa22.24■■□□□ 1.15
USP39-209ENST00000458268 CCAR1Q8IX12 1150 aaKnown RBP22.24■■□□□ 1.15
USP39-209ENST00000458268 SH3TC2Q8TF17 1288 aa22.24■■□□□ 1.15
USP39-209ENST00000458268 C12orf42Q96LP6 360 aa22.24■■□□□ 1.15
USP39-209ENST00000458268 CWC22Q9HCG8 908 aaKnown RBP22.24■■□□□ 1.15
USP39-209ENST00000458268 SRRDQ9UH36 339 aa22.24■■□□□ 1.15
USP39-209ENST00000458268 FOXP2O15409 715 aa22.23■■□□□ 1.15
USP39-209ENST00000458268 PRKCZQ05513 592 aa22.23■■□□□ 1.15
USP39-209ENST00000458268 FAM47AQ5JRC9 791 aa22.23■■□□□ 1.15
USP39-209ENST00000458268 KANSL2Q9H9L4 492 aa22.23■■□□□ 1.15
USP39-209ENST00000458268 BIN2Q9UBW5 565 aaPredicted RBP22.23■■□□□ 1.15
USP39-209ENST00000458268 NEFLP07196 543 aa22.22■■□□□ 1.15
USP39-209ENST00000458268 TSPY3P0CV98 308 aa22.22■■□□□ 1.15
USP39-209ENST00000458268 TSPY8P0CW00 308 aa22.22■■□□□ 1.15
USP39-209ENST00000458268 GSPT1P15170 499 aaKnown RBP22.22■■□□□ 1.15
USP39-209ENST00000458268 HAND2P61296 217 aa22.22■■□□□ 1.15
USP39-209ENST00000458268 WDR78Q5VTH9 848 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 149.3 ms