RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 HEATR3Q7Z4Q2 680 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 GBP3Q9H0R5 595 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 KAT14Q9H8E8 782 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 L2HGDHQ9H9P8 463 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 HNRNPH2P55795 449 aaKnown RBP13.42□□□□□ -0.26
MSH6-204ENST00000445503 LONRF2Q1L5Z9 754 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 NOM1Q5C9Z4 860 aaKnown RBP13.42□□□□□ -0.26
MSH6-204ENST00000445503 DZIP1Q86YF9 867 aaKnown RBP13.42□□□□□ -0.26
MSH6-204ENST00000445503 ANKRD18AQ8IVF6 992 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 REXO1L1PQ8IX06 675 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 NELFBQ8WX92 580 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 CDK5RAP3Q96JB5 506 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 RUFY1Q96T51 708 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 NAPGQ99747 312 aaPredicted RBP13.42□□□□□ -0.26
MSH6-204ENST00000445503 ZNF446Q9NWS9 450 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 RTL9Q8NET4 1388 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 ENC1O14682 589 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 PLEKHA8P1O95397 391 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 PDE11AQ9HCR9 933 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 AATFQ9NY61 560 aaKnown RBP eCLIP13.42□□□□□ -0.26
MSH6-204ENST00000445503 MROH5Q6ZUA9 1318 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 CPDO75976 1380 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 NUTM2BA6NNL0 878 aaPredicted RBP13.41□□□□□ -0.26
MSH6-204ENST00000445503 GSG1L2A8MUP6 293 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 NUTM2EB1AL46 878 aaPredicted RBP13.41□□□□□ -0.26
MSH6-204ENST00000445503 CCDC122Q5T0U0 273 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 EPB41L4AQ9HCS5 686 aaPredicted RBP13.41□□□□□ -0.26
MSH6-204ENST00000445503 TFCP2L1Q9NZI6 479 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 LUC7L2Q9Y383 392 aaKnown RBP13.41□□□□□ -0.26
MSH6-204ENST00000445503 SRPRBQ9Y5M8 271 aaKnown RBP13.41□□□□□ -0.26
MSH6-204ENST00000445503 PARP3Q9Y6F1 533 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 PAK1Q13153 545 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 CCDC181Q5TID7 509 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 ZHX3Q9H4I2 956 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 MRPL44Q9H9J2 332 aaKnown RBP13.41□□□□□ -0.26
MSH6-204ENST00000445503 MCM9Q9NXL9 1143 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 MACROD2A1Z1Q3 448 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 BMP15O95972 392 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 IDEP14735 1019 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 SPAG1Q07617 926 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 FCHSD1Q86WN1 690 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 RASGRP4Q8TDF6 673 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 RSPH14Q9UHP6 348 aa13.41□□□□□ -0.26
MSH6-204ENST00000445503 FBXO2Q9UK22 296 aaPredicted RBP13.41□□□□□ -0.26
MSH6-204ENST00000445503 CC2D1AQ6P1N0 951 aaPredicted RBP13.4□□□□□ -0.26
MSH6-204ENST00000445503 HDXQ7Z353 690 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 TC2NQ8N9U0 490 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 NKX2-3Q8TAU0 364 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 RABGGTAQ92696 567 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 PAGE5Q96GU1 130 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 POTEB2H3BUK9 544 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 ATP2B2Q01814 1243 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 SPA17Q15506 151 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 ZSCAN10Q96SZ4 725 aaPredicted RBP13.4□□□□□ -0.26
MSH6-204ENST00000445503 RABEP2Q9H5N1 569 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 HPSEQ9Y251 543 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 SOS2Q07890 1332 aaPredicted RBP13.4□□□□□ -0.26
MSH6-204ENST00000445503 MYO1BO43795 1136 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 SOGA3Q5TF21 947 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 GPKOWQ92917 476 aaPredicted RBP eCLIP13.4□□□□□ -0.261e-10■■□□□ 11.7
MSH6-204ENST00000445503 PSMB7Q99436 277 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 MAP3K14Q99558 947 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 C1orf167Q5SNV9 1468 aa13.4□□□□□ -0.26
MSH6-204ENST00000445503 TRIML1Q8N9V2 468 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 NOC3LQ8WTT2 800 aaKnown RBP13.39□□□□□ -0.27
MSH6-204ENST00000445503 JCADQ9P266 1359 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 FHOD1Q9Y613 1164 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 FOXP2O15409 715 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 ZMYND10O75800 440 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 H2AFXP16104 143 aaPredicted RBP13.39□□□□□ -0.27
MSH6-204ENST00000445503 PLA2G4AP47712 749 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 ST5P78524 1137 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 CHRNDQ07001 517 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 MORC3Q14149 939 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 ZSCAN26Q16670 478 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 SRGAP1Q7Z6B7 1085 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 RGS22Q8NE09 1264 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.39□□□□□ -0.27
MSH6-204ENST00000445503 RMND1Q9NWS8 449 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 CDC23Q9UJX2 597 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 KCNJ18B7U540 433 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 PSMA7O14818 248 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 ERCC5P28715 1186 aaPredicted RBP13.39□□□□□ -0.27
MSH6-204ENST00000445503 KIF5BP33176 963 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 TOB1P50616 345 aaPredicted RBP13.39□□□□□ -0.27
MSH6-204ENST00000445503 ASIC1P78348 528 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 PIP4K2BP78356 416 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 KCNJ12Q14500 433 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 CYP26C1Q6V0L0 522 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 SGMS1Q86VZ5 419 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 TMTC1Q8IUR5 882 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 ZNF444Q8N0Y2 327 aaPredicted RBP13.39□□□□□ -0.27
MSH6-204ENST00000445503 CRNKL1Q9BZJ0 848 aaKnown RBP13.39□□□□□ -0.27
MSH6-204ENST00000445503 TTF2Q9UNY4 1162 aaKnown RBP13.39□□□□□ -0.27
MSH6-204ENST00000445503 SPATA31A3Q5VYP0 1347 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 CCDC96Q2M329 555 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 SUSD4Q5VX71 490 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 DTHD1Q6ZMT9 781 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 CARD10Q9BWT7 1032 aa13.39□□□□□ -0.27
MSH6-204ENST00000445503 NBPF3Q9H094 633 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms