RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 IER5Q5VY09 327 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 LRRC69Q6ZNQ3 347 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 BTLAQ7Z6A9 289 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 FCHSD1Q86WN1 690 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CLASRPQ8N2M8 674 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 GLIS3Q8NEA6 775 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 WNT2BQ93097 391 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 NECAB3Q96P71 396 aaPredicted RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 MRPL4Q9BYD3 311 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CHRDQ9H2X0 955 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 STRN4Q9NRL3 753 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 SUCOQ9UBS9 1254 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 ZBTB21Q9ULJ3 1066 aa2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 ISY1Q9ULR0 285 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 CTDP1Q9Y5B0 961 aaPredicted RBP2.82□□□□□ -1.96
CCDC88A-208ENST00000444458 POTECB2RU33 542 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 XPOTO43592 962 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 LILRA1O75019 489 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 HSP90AB1P08238 724 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 SETSIPP0DME0 302 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 VDRP11473 427 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 CYP2C19P33261 490 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ADD1P35611 737 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PHKA2P46019 1235 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 RENBPP51606 427 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 GRM3Q14832 879 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 LONRF1Q17RB8 773 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 TTLL5Q6EMB2 1281 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 OSMRQ99650 979 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 AARSD1Q9BTE6 412 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PHAXQ9H814 394 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 TMEM39AQ9NV64 488 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PHTF1Q9UMS5 762 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 APOBEC2Q9Y235 224 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 GIT1Q9Y2X7 761 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PHLDB1Q86UU1 1377 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 hCG_1642624A0A1W2PR95 340 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ANO9A1A5B4 782 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 GABRDO14764 452 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ERC2O15083 957 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ADCY3O60266 1144 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 AGR2O95994 175 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ADH1AP07327 375 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 DDIT3P35638 169 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 AK2P54819 239 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 SUMO1P63165 101 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 RELBQ01201 579 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 SLC7A5Q01650 507 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PCBP1Q15365 356 aaKnown RBP eCLIP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PGM2L1Q6PCE3 622 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 GET4Q7L5D6 327 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 SCUBE1Q8IWY4 988 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 EXOC2Q96KP1 924 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 CLUHP3Q96NS8 147 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 SMC4Q9NTJ3 1288 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 MKS1Q9NXB0 559 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PNMA8BQ9ULN7 279 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 AFG3L2Q9Y4W6 797 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ENC1O14682 589 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PIP5K1CO60331 668 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ABLIM3O94929 683 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 EYA4O95677 639 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 CYP2E1P05181 493 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PGRP06401 933 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 FAM163BP0C2L3 166 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 YY1P25490 414 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 INPP5BP32019 993 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 HTR3AP46098 478 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 RGL3Q3MIN7 710 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 FOXB2Q5VYV0 432 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 LLGL2Q6P1M3 1020 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 C11orf74Q86VG3 221 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 RBBP8NLQ8NC74 664 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ACSBG1Q96GR2 724 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ANTXR1Q9H6X2 564 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 SEC31BQ9NQW1 1179 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 ZNF69Q9UC07 566 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 LRCH1Q9Y2L9 728 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 KCNMB2Q9Y691 235 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 NISCHQ9Y2I1 1504 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 TNKSO95271 1327 aa2.81□□□□□ -1.96
CCDC88A-208ENST00000444458 PAGE1O75459 146 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 S1PR4O95977 384 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 RAG1P15918 1043 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 HSPA6P17066 643 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 DHCR24Q15392 516 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 SPRED3Q2MJR0 410 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 IFIT1BQ5T764 474 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 CATIPQ7Z7H3 387 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 SPATA5Q8NB90 893 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 NGDNQ8NEJ9 315 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 POF1BQ8WVV4 589 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 BTN2A2Q8WVV5 523 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 MAGEB10Q96LZ2 347 aaPredicted RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 EIF2AK1Q9BQI3 630 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 WBP1LQ9NX94 342 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 TNPO3Q9Y5L0 923 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 TLL2Q9Y6L7 1015 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 FAM177BA6PVY3 158 aa2.8□□□□□ -1.96
CCDC88A-208ENST00000444458 TNFAIP3P21580 790 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms