RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ZP2Q05996 745 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 CBLL1Q75N03 491 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 ACSF2Q96CM8 615 aaPredicted RBP5.67□□□□□ -1.5
VPS41-207ENST00000439468 HSPA12BQ96MM6 686 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 RSRP1Q9BUV0 290 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 PRDM7Q9NQW5 492 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 ADAM30Q9UKF2 790 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 RNASE1P07998 156 aaKnown RBP5.66□□□□□ -1.5
VPS41-207ENST00000439468 HS2ST1Q7LGA3 356 aa5.66□□□□□ -1.5
VPS41-207ENST00000439468 USP48Q86UV5 1035 aa5.66□□□□□ -1.5
VPS41-207ENST00000439468 MCATQ8IVS2 390 aaKnown RBP5.66□□□□□ -1.5
VPS41-207ENST00000439468 MBNL3Q9NUK0 354 aaKnown RBP5.66□□□□□ -1.5
VPS41-207ENST00000439468 ADAMTS6Q9UKP5 1117 aa5.66□□□□□ -1.5
VPS41-207ENST00000439468 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.66□□□□□ -1.5
VPS41-207ENST00000439468 CAPN6Q9Y6Q1 641 aa5.66□□□□□ -1.5
VPS41-207ENST00000439468 PITPNM2Q9BZ72 1349 aa5.66□□□□□ -1.5
VPS41-207ENST00000439468 CNTNAP4Q9C0A0 1308 aa5.66□□□□□ -1.5
VPS41-207ENST00000439468 FAM221AA4D161 298 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 UPK3BL1B0FP48 263 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 UPK3BL2E5RIL1 263 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 IGSF3O75054 1194 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 ZNF865P0CJ78 1059 aaPredicted RBP5.65□□□□□ -1.5
VPS41-207ENST00000439468 JUNBP17275 347 aaPredicted RBP5.65□□□□□ -1.5
VPS41-207ENST00000439468 TXKP42681 527 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 KIR3DL1P43629 444 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 MPP2Q14168 576 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 SLC23A3Q6PIS1 610 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 ERMP1Q7Z2K6 904 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 PHACTR4Q8IZ21 702 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 LRRN4CLQ8ND94 238 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 FBXO27Q8NI29 283 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 ASIC4Q96FT7 647 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 CARS2Q9HA77 564 aaKnown RBP5.65□□□□□ -1.5
VPS41-207ENST00000439468 ATP13A1Q9HD20 1204 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 REV1Q9UBZ9 1251 aa5.65□□□□□ -1.5
VPS41-207ENST00000439468 DDX41Q9UJV9 622 aaKnown RBP5.65□□□□□ -1.5
VPS41-207ENST00000439468 KRTAP4-8A0A0G2JLE6 195 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 HTR3BO95264 441 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 EIF4A3P38919 411 aaKnown RBP5.64□□□□□ -1.51
VPS41-207ENST00000439468 CWF19L2Q2TBE0 894 aaKnown RBP5.64□□□□□ -1.51
VPS41-207ENST00000439468 NAALADL2Q58DX5 795 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 C22orf34Q6ZV56 151 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 REC114Q7Z4M0 266 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 CYB5D2Q8WUJ1 264 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 UBE2FQ969M7 185 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 COX4I2Q96KJ9 171 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 ZSWIM5Q9P217 1185 aa5.64□□□□□ -1.51
VPS41-207ENST00000439468 SUPT16HQ9Y5B9 1047 aaKnown RBP5.64□□□□□ -1.51
VPS41-207ENST00000439468 RBAK-RBAKDNI3L0D1 243 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 ITGB5P18084 799 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 TNK2Q07912 1038 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 MLECQ14165 292 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 FBXL19Q6PCT2 694 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 FAM196AQ6ZSG2 479 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 TGIF2Q9GZN2 237 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 CAPN10Q9HC96 672 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 CEP131Q9UPN4 1083 aa5.63□□□□□ -1.51
VPS41-207ENST00000439468 POLR3KQ9Y2Y1 108 aaPredicted RBP5.63□□□□□ -1.51
VPS41-207ENST00000439468 PAPLNO95428 1278 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 TMEM201Q5SNT2 666 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 ATG4DQ86TL0 474 aaPredicted RBP5.62□□□□□ -1.51
VPS41-207ENST00000439468 KRTAP19-1Q8IUB9 90 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 DNAJB8Q8NHS0 232 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 FAM168AQ92567 244 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 CCSER2Q9H7U1 834 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 SEMA3GQ9NS98 782 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 ADAMTS1Q9UHI8 967 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 KCNH3Q9ULD8 1083 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 PCDHB14Q9Y5E9 798 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 ST14Q9Y5Y6 855 aa5.62□□□□□ -1.51
VPS41-207ENST00000439468 CHURC1-FNTBB4DL54 471 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 GARTP22102 1010 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 GBP1P32455 592 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 MCM4P33991 863 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 ZC3H6P61129 1189 aaKnown RBP5.61□□□□□ -1.51
VPS41-207ENST00000439468 SEZ6Q53EL9 994 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 THAP5Q7Z6K1 395 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 ZNF654Q8IZM8 581 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 BAHD1Q8TBE0 780 aaPredicted RBP5.61□□□□□ -1.51
VPS41-207ENST00000439468 ZNF296Q8WUU4 475 aaPredicted RBP5.61□□□□□ -1.51
VPS41-207ENST00000439468 TINF2Q9BSI4 451 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 BRMS1Q9HCU9 246 aa5.61□□□□□ -1.51
VPS41-207ENST00000439468 RAG1P15918 1043 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 APOBRQ0VD83 1088 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 PAK2Q13177 524 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 CREG2Q8IUH2 290 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 SLFN12Q8IYM2 578 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 PIWIL2Q8TC59 973 aaKnown RBP5.6□□□□□ -1.51
VPS41-207ENST00000439468 PPP1R13LQ8WUF5 828 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 EAF1Q96JC9 268 aaPredicted RBP5.6□□□□□ -1.51
VPS41-207ENST00000439468 CCDC74BQ96LY2 380 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 FMNL2Q96PY5 1086 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 KIF2CQ99661 725 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 TRIT1Q9H3H1 467 aaKnown RBP5.6□□□□□ -1.51
VPS41-207ENST00000439468 GPATCH2Q9NW75 528 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 UBP1Q9NZI7 540 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 LMCD1Q9NZU5 365 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 SLAMF8Q9P0V8 285 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 USP35Q9P2H5 1018 aa5.6□□□□□ -1.51
VPS41-207ENST00000439468 ROBO2Q9HCK4 1378 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms