RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KIF1BPQ96EK5 621 aa17.6■□□□□ 0.41
SDC1-204ENST00000429035 CRNKL1Q9BZJ0 848 aaKnown RBP17.6■□□□□ 0.41
SDC1-204ENST00000429035 CRISPLD2Q9H0B8 497 aa17.6■□□□□ 0.41
SDC1-204ENST00000429035 EHD4Q9H223 541 aa17.6■□□□□ 0.41
SDC1-204ENST00000429035 PORCNQ9H237 461 aa17.6■□□□□ 0.41
SDC1-204ENST00000429035 ZNF532Q9HCE3 1301 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 PLCD1P51178 756 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 TATDN1Q6P1N9 297 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 GPR142Q7Z601 462 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 C7orf61Q8IZ16 206 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 ACER1Q8TDN7 264 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 RIOK1Q9BRS2 568 aaKnown RBP17.59■□□□□ 0.41
SDC1-204ENST00000429035 MCM9Q9NXL9 1143 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 RBPJLQ9UBG7 517 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 DDX19BQ9UMR2 479 aa17.59■□□□□ 0.41
SDC1-204ENST00000429035 USP17L15C9J2P7 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP17L13C9JLJ4 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP17L11C9JVI0 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP17L18D6R9N7 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP17L22D6RA61 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP17L17D6RBQ6 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP17L19D6RCP7 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP17L20D6RJB6 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 VCAM1P19320 739 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 RGS2P41220 211 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP14P54578 494 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 USP17L24Q0WX57 530 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 Q3C1V9 767 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 PLEKHH3Q7Z736 793 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 SDR42E1Q8WUS8 393 aa17.58■□□□□ 0.4
SDC1-204ENST00000429035 EDC3Q96F86 508 aaKnown RBP17.58■□□□□ 0.4
SDC1-204ENST00000429035 CAPN2P17655 700 aa17.57■□□□□ 0.4
SDC1-204ENST00000429035 SHMT1P34896 483 aa17.57■□□□□ 0.4
SDC1-204ENST00000429035 EVX2Q03828 476 aa17.57■□□□□ 0.4
SDC1-204ENST00000429035 LCORLQ8N3X6 602 aa17.57■□□□□ 0.4
SDC1-204ENST00000429035 C12orf42Q96LP6 360 aa17.57■□□□□ 0.4
SDC1-204ENST00000429035 APBA2Q99767 749 aa17.57■□□□□ 0.4
SDC1-204ENST00000429035 RPAP3Q9H6T3 665 aaPredicted RBP17.57■□□□□ 0.4
SDC1-204ENST00000429035 ZMYND8Q9ULU4 1186 aaPredicted RBP17.57■□□□□ 0.4
SDC1-204ENST00000429035 CCNA1P78396 465 aa17.56■□□□□ 0.4
SDC1-204ENST00000429035 SEPT2Q15019 361 aa17.56■□□□□ 0.4
SDC1-204ENST00000429035 CCL14Q16627 93 aa17.56■□□□□ 0.4
SDC1-204ENST00000429035 TMED8Q6PL24 325 aaPredicted RBP17.56■□□□□ 0.4
SDC1-204ENST00000429035 RPAP2Q8IXW5 612 aaPredicted RBP17.56■□□□□ 0.4
SDC1-204ENST00000429035 ANKLE1Q8NAG6 615 aa17.56■□□□□ 0.4
SDC1-204ENST00000429035 KIAA1683Q9H0B3 1180 aa17.56■□□□□ 0.4
SDC1-204ENST00000429035 BOLA2Q9H3K6 86 aa17.56■□□□□ 0.4
SDC1-204ENST00000429035 C11orf49Q9H6J7 331 aa17.56■□□□□ 0.4
SDC1-204ENST00000429035 ARMT1Q9H993 441 aa17.56■□□□□ 0.4
SDC1-204ENST00000429035 CYP2D6P10635 497 aa17.55■□□□□ 0.4
SDC1-204ENST00000429035 TRMT44Q8IYL2 757 aaKnown RBP17.55■□□□□ 0.4
SDC1-204ENST00000429035 SLC44A5Q8NCS7 719 aa17.55■□□□□ 0.4
SDC1-204ENST00000429035 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.55■□□□□ 0.4
SDC1-204ENST00000429035 NBPF3Q9H094 633 aa17.55■□□□□ 0.4
SDC1-204ENST00000429035 RABGAP1Q9Y3P9 1069 aa17.55■□□□□ 0.4
SDC1-204ENST00000429035 CNMDO75829 334 aa17.54■□□□□ 0.4
SDC1-204ENST00000429035 GLRX3O76003 335 aaKnown RBP17.54■□□□□ 0.4
SDC1-204ENST00000429035 MBD4O95243 580 aa17.54■□□□□ 0.4
SDC1-204ENST00000429035 XRCC5P13010 732 aaKnown RBP17.54■□□□□ 0.4
SDC1-204ENST00000429035 CCND3P30281 292 aaPredicted RBP17.54■□□□□ 0.4
SDC1-204ENST00000429035 CACNB2Q08289 660 aaPredicted RBP17.54■□□□□ 0.4
SDC1-204ENST00000429035 SLFNL1Q499Z3 407 aa17.54■□□□□ 0.4
SDC1-204ENST00000429035 SAMD1Q6SPF0 538 aaPredicted RBP17.54■□□□□ 0.4
SDC1-204ENST00000429035 CATSPERGQ6ZRH7 1159 aa17.54■□□□□ 0.4
SDC1-204ENST00000429035 TANGO6Q9C0B7 1094 aa17.54■□□□□ 0.4
SDC1-204ENST00000429035 PAG1Q9NWQ8 432 aa17.54■□□□□ 0.4
SDC1-204ENST00000429035 STAP2Q9UGK3 403 aa17.54■□□□□ 0.4
SDC1-204ENST00000429035 IVNS1ABPQ9Y6Y0 642 aa17.54■□□□□ 0.4
SDC1-204ENST00000429035 A0A0G2JMZ2 1700 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 SPDYE16A6NNV3 312 aaPredicted RBP17.53■□□□□ 0.4
SDC1-204ENST00000429035 RAB11FIP3O75154 756 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 SYN1P17600 705 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 GUCY1A2P33402 732 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 MAP2K5Q13163 448 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 MORN1Q5T089 497 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 MAP3K21Q5TCX8 1036 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 POTEEQ6S8J3 1075 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 SIRT2Q8IXJ6 389 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 DCP1AQ9NPI6 582 aaPredicted RBP17.53■□□□□ 0.4
SDC1-204ENST00000429035 ZBTB40Q9NUA8 1239 aa17.53■□□□□ 0.4
SDC1-204ENST00000429035 TCRBV5S4A2TA0A5A2 114 aa17.52■□□□□ 0.4
SDC1-204ENST00000429035 GABPAQ06546 454 aa17.52■□□□□ 0.4
SDC1-204ENST00000429035 CLEC10AQ8IUN9 316 aa17.52■□□□□ 0.4
SDC1-204ENST00000429035 DYNLL2Q96FJ2 89 aa17.52■□□□□ 0.4
SDC1-204ENST00000429035 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.52■□□□□ 0.4
SDC1-204ENST00000429035 CHMP4BQ9H444 224 aaKnown RBP17.52■□□□□ 0.4
SDC1-204ENST00000429035 BTBD7Q9P203 1132 aa17.52■□□□□ 0.4
SDC1-204ENST00000429035 RCAN3Q9UKA8 241 aa17.52■□□□□ 0.4
SDC1-204ENST00000429035 OGDHLQ9ULD0 1010 aa17.52■□□□□ 0.4
SDC1-204ENST00000429035 COL11A1P12107 1806 aaPredicted RBP17.51■□□□□ 0.39
SDC1-204ENST00000429035 PRKAB2O43741 272 aa17.51■□□□□ 0.39
SDC1-204ENST00000429035 ADD2P35612 726 aa17.51■□□□□ 0.39
SDC1-204ENST00000429035 MFSD14CQ5VZR4 134 aa17.51■□□□□ 0.39
SDC1-204ENST00000429035 AMOTL1Q8IY63 956 aa17.51■□□□□ 0.39
SDC1-204ENST00000429035 USP6NLQ92738 828 aa17.51■□□□□ 0.39
SDC1-204ENST00000429035 PRO3102Q9H379 93 aa17.51■□□□□ 0.39
SDC1-204ENST00000429035 PARP14Q460N5 1801 aa17.51■□□□□ 0.39
SDC1-204ENST00000429035 RLFQ13129 1914 aa17.51■□□□□ 0.39
SDC1-204ENST00000429035 PFASO15067 1338 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 ZNF236Q9UL36 1845 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms