RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TGFB2P61812 414 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 INF2Q27J81 1249 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 MFSD14BQ5SR56 506 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 ATF5Q9Y2D1 282 aaPredicted RBP11.06□□□□□ -0.64
USP54-205ENST00000424265 CHUKO15111 745 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 MBD4O95243 580 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 PLA2G4AP47712 749 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 KIF9Q9HAQ2 790 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 RANBP6O60518 1105 aaKnown RBP11.06□□□□□ -0.64
USP54-205ENST00000424265 PRPHP41219 470 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 DPY19L2Q6NUT2 758 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 ATP6V0A2Q9Y487 856 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 RIPOR2Q9Y4F9 1068 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 SLC12A7Q9Y666 1083 aa11.06□□□□□ -0.64
USP54-205ENST00000424265 GOLGA6CA6NDK9 693 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 GOLGA6BA6NDN3 693 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 IFIT3O14879 490 aaKnown RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 SEC31AO94979 1220 aaKnown RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 GOLGA6DP0CG33 693 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 LRRC23Q53EV4 343 aaPredicted RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 SLC4A9Q96Q91 983 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 IQCGQ9H095 443 aaKnown RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 ZCCHC17Q9NP64 241 aaKnown RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 GOLGA6AQ9NYA3 693 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 ARPP21Q9UBL0 812 aaPredicted RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 FHOD1Q9Y613 1164 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 TSPY2A6NKD2 308 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 FAM114A1Q8IWE2 563 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 RNF168Q8IYW5 571 aaPredicted RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 OTUD7AQ8TE49 926 aaPredicted RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 TAOK3Q9H2K8 898 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 RGPD5Q99666 1765 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 SCN11AQ9UI33 1791 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 UBN2Q6ZU65 1347 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 H7C1D1 291 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 CCDC26Q8TAB7 109 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 INCENPQ9NQS7 918 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 GPAA1O43292 621 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 GYG1P46976 350 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 BCAMP50895 628 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 IQUBQ8NA54 791 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 ZBTB10Q96DT7 871 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 BAG1Q99933 345 aaPredicted RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 SH2D4AQ9H788 454 aa11.05□□□□□ -0.64
USP54-205ENST00000424265 WDR33Q9C0J8 1336 aaKnown RBP11.05□□□□□ -0.64
USP54-205ENST00000424265 COQ9O75208 318 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 SKILP12757 684 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 CEP85LQ5SZL2 805 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 NAT10Q9H0A0 1025 aaKnown RBP11.04□□□□□ -0.64
USP54-205ENST00000424265 KIF4AO95239 1232 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 PHKA1P46020 1223 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 GTF2IP78347 998 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 DLGAP5Q15398 846 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 ZNF396Q96N95 335 aaPredicted RBP11.04□□□□□ -0.64
USP54-205ENST00000424265 SCLT1Q96NL6 688 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 ZNF532Q9HCE3 1301 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 PDE6AP16499 860 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 CCDC50Q8IVM0 306 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 KCNF1Q9H3M0 494 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 ZSCAN16Q9H4T2 348 aaPredicted RBP11.04□□□□□ -0.64
USP54-205ENST00000424265 KCPQ6ZWJ8 1503 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 VPS33BQ9H267 617 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 MCM9Q9NXL9 1143 aa11.04□□□□□ -0.64
USP54-205ENST00000424265 TUBB4AP04350 444 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 ATP2B2Q01814 1243 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 GPR162Q16538 588 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 TMEM67Q5HYA8 995 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 RNF187Q5TA31 235 aaPredicted RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 CCDC12Q8WUD4 166 aaPredicted RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 CELF1Q92879 486 aaKnown RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 KAT14Q9H8E8 782 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 ABCA3Q99758 1704 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 PPFIA4O75335 1185 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 ZBTB7AO95365 584 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 CREB3L3Q68CJ9 461 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 NOC3LQ8WTT2 800 aaKnown RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 TMEM87BQ96K49 555 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 USP26Q9BXU7 913 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 ATP8A2Q9NTI2 1148 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP54-205ENST00000424265 VPS37CA5D8V6 355 aaPredicted RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 F8W031 263 aaPredicted RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 PPP2R5BQ15173 497 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 ARMC9Q7Z3E5 817 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 SPDL1Q96EA4 605 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 TSPY3P0CV98 308 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 TSPY8P0CW00 308 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 TPP2P29144 1249 aaPredicted RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 LRMPQ12912 555 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 R3HDM1Q15032 1099 aaKnown RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 ZMYM1Q5SVZ6 1142 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 DEFB132Q7Z7B7 95 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 TM6SF1Q9BZW5 370 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 TRIM4Q9C037 500 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 GBP3Q9H0R5 595 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 PLEKHA4Q9H4M7 779 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 SEC63Q9UGP8 760 aaKnown RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 TCEAL9Q9UHQ7 104 aa11.03□□□□□ -0.64
USP54-205ENST00000424265 TTF2Q9UNY4 1162 aaKnown RBP11.03□□□□□ -0.64
USP54-205ENST00000424265 PAX3P23760 479 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms