RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 USP17L11C9JVI0 530 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L18D6R9N7 530 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L22D6RA61 530 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L17D6RBQ6 530 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L19D6RCP7 530 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L20D6RJB6 530 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 XRCC5P13010 732 aaKnown RBP13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 VCAM1P19320 739 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 ADD2P35612 726 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L24Q0WX57 530 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 ZYXQ15942 572 aaKnown RBP13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 CCAR1Q8IX12 1150 aaKnown RBP13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 TRMT44Q8IYL2 757 aaKnown RBP13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 DPF3Q92784 378 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 EDC3Q96F86 508 aaKnown RBP13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 HAUS7Q99871 368 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 PAGR1Q9BTK6 254 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 LRRCC1Q9C099 1032 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 CRISPLD2Q9H0B8 497 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 BCL11AQ9H165 835 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 BOLA2Q9H3K6 86 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 RBPJLQ9UBG7 517 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 MYH8P13535 1937 aa13.96□□□□□ -0.18
SQSTM1-203ENST00000422245 RPTORQ8N122 1335 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 MBD4O95243 580 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 TFRCP02786 760 aaKnown RBP13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 CCNA1P78396 465 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 C20orf194Q5TEA3 1177 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 ACER1Q8TDN7 264 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 SDR42E1Q8WUS8 393 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 TRIB2Q92519 343 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 SWAP70Q9UH65 585 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 RABGAP1Q9Y3P9 1069 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 NR2E3Q9Y5X4 410 aa13.95□□□□□ -0.18
SQSTM1-203ENST00000422245 TRIOBPQ9H2D6 2365 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 PEX10O60683 326 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 ZKSCAN1P17029 563 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 CYP2B6P20813 491 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 GUCY1A2P33402 732 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 RGS2P41220 211 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 SEPT2Q15019 361 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 UBE3CQ15386 1083 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 ZSCAN25Q6NSZ9 544 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 LBX2Q6XYB7 198 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 CATSPERGQ6ZRH7 1159 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 GPR142Q7Z601 462 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 PLEKHH3Q7Z736 793 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 AMOTL1Q8IY63 956 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 ANKLE1Q8NAG6 615 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 APBA2Q99767 749 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 PORCNQ9H237 461 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 ARMT1Q9H993 441 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 CWC22Q9HCG8 908 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 HMX1Q9NP08 348 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 ATP8A2Q9NTI2 1148 aa13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 COLQQ9Y215 455 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-203ENST00000422245 MPHOSPH10O00566 681 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 GLRX3O76003 335 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 PRKAR2AP13861 404 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 MAP3K21Q5TCX8 1036 aa13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 POTEEQ6S8J3 1075 aa13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 TMEM179Q6ZVK1 233 aa13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 USP6NLQ92738 828 aa13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 DDRGK1Q96HY6 314 aa13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 RPAP3Q9H6T3 665 aaPredicted RBP13.93□□□□□ -0.18
SQSTM1-203ENST00000422245 SPDYE16A6NNV3 312 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 CNMDO75829 334 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 CYP2D6P10635 497 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 EVX2Q03828 476 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 TRIM32Q13049 653 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 Q3C1V9 767 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 MORN1Q5T089 497 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 CHRDL2Q6WN34 429 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 NECAB2Q7Z6G3 386 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 SLC44A5Q8NCS7 719 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 GPATCH3Q96I76 525 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 SH2D4AQ9H788 454 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 ECHDC1Q9NTX5 307 aa13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 BAZ2AQ9UIF9 1905 aaKnown RBP13.92□□□□□ -0.18
SQSTM1-203ENST00000422245 PRKAB2O43741 272 aa13.91□□□□□ -0.18
SQSTM1-203ENST00000422245 FXR1P51114 621 aaKnown RBP eCLIP13.91□□□□□ -0.184e-6■□□□□ 9.8
SQSTM1-203ENST00000422245 ICA1Q05084 483 aa13.91□□□□□ -0.18
SQSTM1-203ENST00000422245 LPAR1Q92633 364 aa13.91□□□□□ -0.18
SQSTM1-203ENST00000422245 A0A0G2JMZ2 1700 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 A0A1W2PRG0 241 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 SLC15A5A6NIM6 579 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 SMARCA5O60264 1052 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 EVI5O60447 810 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 MAP2K5Q13163 448 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 SLFNL1Q499Z3 407 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 C12orf60Q5U649 245 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 DIS3LQ8TF46 1054 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 DYNLL2Q96FJ2 89 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 PAWRQ96IZ0 340 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 CCDC17Q96LX7 622 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 TANGO6Q9C0B7 1094 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 ARHGEF10LQ9HCE6 1279 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 ARPP21Q9UBL0 812 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 OGDHLQ9ULD0 1010 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 SLC4A4Q9Y6R1 1079 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms