RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SLC44A5Q8NCS7 719 aa14.04□□□□□ -0.16
USP4-204ENST00000416417 EHD4Q9H223 541 aa14.04□□□□□ -0.16
USP4-204ENST00000416417 GINM1Q9NU53 330 aa14.04□□□□□ -0.16
USP4-204ENST00000416417 MCM9Q9NXL9 1143 aa14.04□□□□□ -0.16
USP4-204ENST00000416417 MPHOSPH10O00566 681 aaKnown RBP14.03□□□□□ -0.16
USP4-204ENST00000416417 SMARCA5O60264 1052 aaPredicted RBP14.03□□□□□ -0.16
USP4-204ENST00000416417 EVI5O60447 810 aa14.03□□□□□ -0.16
USP4-204ENST00000416417 IGSF3O75054 1194 aa14.03□□□□□ -0.16
USP4-204ENST00000416417 PRKAR2AP13861 404 aaKnown RBP14.03□□□□□ -0.16
USP4-204ENST00000416417 TTF1Q15361 905 aaPredicted RBP14.03□□□□□ -0.16
USP4-204ENST00000416417 WDR78Q5VTH9 848 aa14.03□□□□□ -0.16
USP4-204ENST00000416417 GPR142Q7Z601 462 aa14.03□□□□□ -0.16
USP4-204ENST00000416417 CLEC10AQ8IUN9 316 aa14.03□□□□□ -0.16
USP4-204ENST00000416417 CCAR1Q8IX12 1150 aaKnown RBP14.03□□□□□ -0.16
USP4-204ENST00000416417 DYNLL2Q96FJ2 89 aa14.03□□□□□ -0.16
USP4-204ENST00000416417 NUDT12Q9BQG2 462 aa14.03□□□□□ -0.16
USP4-204ENST00000416417 CRNKL1Q9BZJ0 848 aaKnown RBP14.03□□□□□ -0.16
USP4-204ENST00000416417 HMX1Q9NP08 348 aaPredicted RBP14.03□□□□□ -0.16
USP4-204ENST00000416417 DDX19BQ9UMR2 479 aa14.03□□□□□ -0.16
USP4-204ENST00000416417 RPTORQ8N122 1335 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 DDX60LQ5H9U9 1706 aaKnown RBP14.02□□□□□ -0.16
USP4-204ENST00000416417 CYP2D7A0A087X1C5 515 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L15C9J2P7 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L13C9JLJ4 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L11C9JVI0 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L18D6R9N7 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L22D6RA61 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L17D6RBQ6 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L19D6RCP7 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L20D6RJB6 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 MS4A1P11836 297 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 VCAM1P19320 739 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 GABPAQ06546 454 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 USP17L24Q0WX57 530 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 CATSPERGQ6ZRH7 1159 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 PLEKHH3Q7Z736 793 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 CERS3Q8IU89 383 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 CWC22Q9HCG8 908 aaKnown RBP14.02□□□□□ -0.16
USP4-204ENST00000416417 CABP5Q9NP86 173 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 BTBD7Q9P203 1132 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 RCAN3Q9UKA8 241 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 NR2E3Q9Y5X4 410 aa14.02□□□□□ -0.16
USP4-204ENST00000416417 NAV1Q8NEY1 1877 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 A0A1W2PRG0 241 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 HMMRO75330 724 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 MBD4O95243 580 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 ZKSCAN1P17029 563 aaPredicted RBP14.01□□□□□ -0.17
USP4-204ENST00000416417 CCND3P30281 292 aaPredicted RBP14.01□□□□□ -0.17
USP4-204ENST00000416417 MAPK4P31152 587 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 MNX1P50219 401 aaPredicted RBP14.01□□□□□ -0.17
USP4-204ENST00000416417 CACNB2Q08289 660 aaPredicted RBP14.01□□□□□ -0.17
USP4-204ENST00000416417 PDE3AQ14432 1141 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 KIAA1755Q5JYT7 1200 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 MORN1Q5T089 497 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 NECAB2Q7Z6G3 386 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 C7orf61Q8IZ16 206 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 USP6NLQ92738 828 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 C12orf42Q96LP6 360 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 KIAA1683Q9H0B3 1180 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 RPAP3Q9H6T3 665 aaPredicted RBP14.01□□□□□ -0.17
USP4-204ENST00000416417 DCP1AQ9NPI6 582 aaPredicted RBP14.01□□□□□ -0.17
USP4-204ENST00000416417 PAG1Q9NWQ8 432 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 STAP2Q9UGK3 403 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 CEP290O15078 2479 aa14.01□□□□□ -0.17
USP4-204ENST00000416417 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14□□□□□ -0.17
USP4-204ENST00000416417 SOCS4Q8WXH5 440 aa14□□□□□ -0.17
USP4-204ENST00000416417 FLRT1Q9NZU1 646 aa14□□□□□ -0.17
USP4-204ENST00000416417 ZMYND8Q9ULU4 1186 aaPredicted RBP14□□□□□ -0.17
USP4-204ENST00000416417 RAB11FIP3O75154 756 aa14□□□□□ -0.17
USP4-204ENST00000416417 ADD2P35612 726 aa14□□□□□ -0.17
USP4-204ENST00000416417 MAP3K21Q5TCX8 1036 aa14□□□□□ -0.17
USP4-204ENST00000416417 SAMD1Q6SPF0 538 aaPredicted RBP14□□□□□ -0.17
USP4-204ENST00000416417 PRO3102Q9H379 93 aa14□□□□□ -0.17
USP4-204ENST00000416417 RABGAP1Q9Y3P9 1069 aa14□□□□□ -0.17
USP4-204ENST00000416417 SPDYE16A6NNV3 312 aaPredicted RBP13.99□□□□□ -0.17
USP4-204ENST00000416417 AKR1B1P15121 316 aa13.99□□□□□ -0.17
USP4-204ENST00000416417 SYN1P17600 705 aa13.99□□□□□ -0.17
USP4-204ENST00000416417 ATP5JP18859 108 aa13.99□□□□□ -0.17
USP4-204ENST00000416417 RGS2P41220 211 aa13.99□□□□□ -0.17
USP4-204ENST00000416417 USP14P54578 494 aa13.99□□□□□ -0.17
USP4-204ENST00000416417 ALPK3Q96L96 1907 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 RANBP2P49792 3224 aaKnown RBP13.98□□□□□ -0.17
USP4-204ENST00000416417 XRCC5P13010 732 aaKnown RBP13.98□□□□□ -0.17
USP4-204ENST00000416417 MAP2K5Q13163 448 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 TSHZ3Q63HK5 1081 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 SPICE1Q8N0Z3 855 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 NPLOC4Q8TAT6 608 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 GTF3C2Q8WUA4 911 aaPredicted RBP13.98□□□□□ -0.17
USP4-204ENST00000416417 APBA2Q99767 749 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 HAUS7Q99871 368 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 TANGO6Q9C0B7 1094 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 C11orf49Q9H6J7 331 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 OGDHLQ9ULD0 1010 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 TRIOBPQ9H2D6 2365 aa13.98□□□□□ -0.17
USP4-204ENST00000416417 LHX8Q68G74 356 aa13.97□□□□□ -0.17
USP4-204ENST00000416417 TMED8Q6PL24 325 aaPredicted RBP13.97□□□□□ -0.17
USP4-204ENST00000416417 SIAH1Q8IUQ4 282 aa13.97□□□□□ -0.17
USP4-204ENST00000416417 STK11IPQ8N1F8 1099 aa13.97□□□□□ -0.17
USP4-204ENST00000416417 NBPF3Q9H094 633 aa13.97□□□□□ -0.17
USP4-204ENST00000416417 PFASO15067 1338 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 217.8 ms