RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 RFX7Q2KHR2 1363 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 B4DLN1 442 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 TTLL1O95922 423 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 LRRC27Q9C0I9 530 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 PLSCR1O15162 318 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 MTIF2P46199 727 aaKnown RBP10.32□□□□□ -0.76
LIG4-202ENST00000405925 GRIPAP1Q4V328 841 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 TCERG1LQ5VWI1 586 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 TRIM47Q96LD4 638 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 AS3MTQ9HBK9 375 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 MYO3BQ8WXR4 1341 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 RPAP1Q9BWH6 1393 aaPredicted RBP10.32□□□□□ -0.76
LIG4-202ENST00000405925 SHPRHQ149N8 1683 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 PRKCSHP14314 528 aaPredicted RBP10.32□□□□□ -0.76
LIG4-202ENST00000405925 NOM1Q5C9Z4 860 aaKnown RBP10.32□□□□□ -0.76
LIG4-202ENST00000405925 USP17L2Q6R6M4 530 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 FBXO33Q7Z6M2 555 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 SMCR8Q8TEV9 937 aaPredicted RBP10.32□□□□□ -0.76
LIG4-202ENST00000405925 USP28Q96RU2 1077 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 RNF181Q9P0P0 153 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 BIN2Q9UBW5 565 aaPredicted RBP10.32□□□□□ -0.76
LIG4-202ENST00000405925 BACH1O14867 736 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 CHMP2AO43633 222 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 FLOT1O75955 427 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 MYCLP12524 364 aaPredicted RBP10.32□□□□□ -0.76
LIG4-202ENST00000405925 LIFRP42702 1097 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 FAM160A1Q05DH4 1040 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 CUL4AQ13619 759 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 ZFYVE27Q5T4F4 411 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 KCTD1Q719H9 257 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 NOSTRINQ8IVI9 506 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 SYCP3Q8IZU3 236 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 RMND1Q9NWS8 449 aa10.32□□□□□ -0.76
LIG4-202ENST00000405925 FGFR1OPO95684 399 aaKnown RBP10.31□□□□□ -0.76
LIG4-202ENST00000405925 ALAS1P13196 640 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 SFPQP23246 707 aaKnown RBP eCLIP10.31□□□□□ -0.76
LIG4-202ENST00000405925 CCDC40Q4G0X9 1142 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 PAGR1Q9BTK6 254 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 MXD3Q9BW11 206 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 ZBTB12Q9Y330 459 aaPredicted RBP10.31□□□□□ -0.76
LIG4-202ENST00000405925 ANKRD26Q9UPS8 1709 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 NEDD4P46934 1319 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 NWD1Q149M9 1564 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 ZNF609O15014 1411 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 GADD45BO75293 160 aaPredicted RBP10.31□□□□□ -0.76
LIG4-202ENST00000405925 CAVIN2O95810 425 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 SLC16A2P36021 539 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 TYRO3Q06418 890 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 SUPT20HL1Q3ZLR7 823 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 FKBP15Q5T1M5 1219 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 GPATCH4Q5T3I0 446 aaKnown RBP10.31□□□□□ -0.76
LIG4-202ENST00000405925 FOXP4Q8IVH2 680 aaPredicted RBP10.31□□□□□ -0.76
LIG4-202ENST00000405925 BLIDQ8IZY5 108 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 STAG1Q8WVM7 1258 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 KCNH3Q9ULD8 1083 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 IVNS1ABPQ9Y6Y0 642 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 PCDHA1Q9Y5I3 950 aa10.31□□□□□ -0.76
LIG4-202ENST00000405925 GH2P01242 217 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 TMED8Q6PL24 325 aaPredicted RBP10.3□□□□□ -0.76
LIG4-202ENST00000405925 STXBP4Q6ZWJ1 553 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 FBXO11Q86XK2 927 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 FAM177A1Q8N128 213 aaPredicted RBP10.3□□□□□ -0.76
LIG4-202ENST00000405925 FAM200AQ8TCP9 573 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 CPLX3Q8WVH0 158 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 RNF26Q9BY78 433 aaPredicted RBP10.3□□□□□ -0.76
LIG4-202ENST00000405925 PSTPIP2Q9H939 334 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 INF2Q27J81 1249 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 TXNRD3Q86VQ6 643 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 AIFM3Q96NN9 605 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 NAP1L4Q99733 375 aaKnown RBP10.3□□□□□ -0.76
LIG4-202ENST00000405925 IL25Q9H293 177 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 ZNRF3Q9ULT6 936 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 DAGLAQ9Y4D2 1042 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 ELP1O95163 1332 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 PSMA7O14818 248 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 POLR2DO15514 142 aaKnown RBP10.3□□□□□ -0.76
LIG4-202ENST00000405925 YEATS4O95619 227 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 SRGNP10124 158 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 IFNAR1P17181 557 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 DDR1Q08345 913 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 ALX1Q15699 326 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 ASPRV1Q53RT3 343 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 STYK1Q6J9G0 422 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 CTR9Q6PD62 1173 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 CYB5R4Q7L1T6 521 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 AOPEPQ8N6M6 819 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 SEPT11Q9NVA2 429 aaKnown RBP10.3□□□□□ -0.76
LIG4-202ENST00000405925 AKAP12Q02952 1782 aa10.3□□□□□ -0.76
LIG4-202ENST00000405925 CUTAO60888 179 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 STX17P56962 302 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 STRIP1Q5VSL9 837 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 GADL1Q6ZQY3 521 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 TDRD7Q8NHU6 1098 aaKnown RBP10.29□□□□□ -0.76
LIG4-202ENST00000405925 ZNF512BQ96KM6 892 aaPredicted RBP10.29□□□□□ -0.76
LIG4-202ENST00000405925 PNPLA7Q6ZV29 1317 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 NMT2O60551 498 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 ADCY5O95622 1261 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 CCT6AP40227 531 aaKnown RBP10.29□□□□□ -0.76
LIG4-202ENST00000405925 TOB2Q14106 344 aaPredicted RBP10.29□□□□□ -0.76
LIG4-202ENST00000405925 ZNF827Q17R98 1081 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms