RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SFMBT2Q5VUG0 894 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 SUCLG2Q96I99 432 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 SATB2Q9UPW6 733 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 WDR7Q9Y4E6 1490 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 LUC7L3O95232 432 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 COG7P83436 770 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 OR8K1Q8NGG5 319 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 KLHDC4Q8TBB5 520 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 PHKBQ93100 1093 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 MCUR1Q96AQ8 359 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 ZNF274Q96GC6 653 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 IFIH1Q9BYX4 1025 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 PPFIA2O75334 1257 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 MRPS9P82933 396 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 PRPF31Q8WWY3 499 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 SEPT10Q9P0V9 454 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 MGEA5O60502 916 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 PDE8AO60658 829 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 GMNNO75496 209 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 KRT71Q3SY84 523 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 PEX26Q7Z412 305 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 PNMA8AQ86V59 439 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 TRMT44Q8IYL2 757 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 DMRT2Q9Y5R5 561 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 EFCAB8A8MWE9 144 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 E7EWF7 191 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 PPM1FP49593 454 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 HHATQ5VTY9 493 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 CCDC62Q6P9F0 684 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 RNF10Q8N5U6 811 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 TRIM58Q8NG06 486 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 RAB17Q9H0T7 212 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 GPCPD1Q9NPB8 672 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 ABCC4O15439 1325 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 HSPA1LP34931 641 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 CCDC170Q8IYT3 715 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 MAIP1Q8WWC4 291 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 PARP2Q9UGN5 583 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 TRAPPC8Q9Y2L5 1435 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 ARHGEF35A5YM69 484 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 GAS8O95995 478 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 HIBADHP31937 336 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 SNX16P57768 344 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 GKAP1Q5VSY0 366 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 LPIN2Q92539 896 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 MTMR6Q9Y217 621 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 RTCBQ9Y3I0 505 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 MRFAP1Q9Y605 127 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 E7EVH7 732 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 PFKFB1P16118 471 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 GCKRQ14397 625 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 CABP7Q86V35 215 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 VPS52Q8N1B4 723 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 TRIML1Q8N9V2 468 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 USP6NLQ92738 828 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 VEZTQ9HBM0 779 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 SERTAD1Q9UHV2 236 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 DKC1O60832 514 aaKnown RBP eCLIP11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 SMIM24O75264 130 aa11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 ZNF215Q9UL58 517 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-203ENST00000396595 VPS41P49754 854 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 ADCY7P51828 1080 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 NUF2Q9BZD4 464 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 RABEP2Q9H5N1 569 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 ODF2LQ9ULJ1 636 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 PNOCQ13519 176 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 PPP2R5EQ16537 467 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 NBPF14Q5TI25 921 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 TTC16Q8NEE8 873 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 GSDMBQ8TAX9 411 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 ARHGEF2Q92974 986 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 PSMB7Q99436 277 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 MYL10Q9BUA6 226 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 BCRP11274 1271 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 GSPT1P15170 499 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 ZNF131P52739 623 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 ADKP55263 362 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 LGSNQ5TDP6 509 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 XAB2Q9HCS7 855 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 KCNJ14Q9UNX9 436 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 DNM3Q9UQ16 869 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 PRDM1O75626 825 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 GNA14O95837 355 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 DENND2CQ68D51 928 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 SPATS2Q86XZ4 545 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 DDX41Q9UJV9 622 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 ZNF608Q9ULD9 1512 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 PZPP20742 1482 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 CCDC169A6NNP5 214 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 RBM6P78332 1123 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 SDCCAG8Q86SQ7 713 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 CCDC105Q8IYK2 499 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 SSH3Q8TE77 659 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 KIFC2Q96AC6 838 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 SAP30BPQ9UHR5 308 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 PPP2R2CQ9Y2T4 447 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 HYOU1Q9Y4L1 999 aa11.34□□□□□ -0.59
LIMCH1-203ENST00000396595 NR1I2O75469 434 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 CMA1P23946 247 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 SLC8A1P32418 973 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms