RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 PHF20Q9BVI0 1012 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 ZNF287Q9HBT7 754 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 VPS54Q9P1Q0 977 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 MYH8P13535 1937 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 FAM237AA0A1B0GTK4 181 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 ZNF202O95125 648 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 MMP10P09238 476 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 ALDH1B1P30837 517 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 NR5A1Q13285 461 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 RESP18Q5W5W9 173 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 C11orf57Q6ZUT1 292 aaPredicted RBP17.22■□□□□ 0.35
CBX3-202ENST00000396386 DGKHQ86XP1 1220 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 BRMS1Q9HCU9 246 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.22■□□□□ 0.35
CBX3-202ENST00000396386 SAP30BPQ9UHR5 308 aaKnown RBP17.22■□□□□ 0.35
CBX3-202ENST00000396386 V9GY48 417 aaPredicted RBP17.22■□□□□ 0.35
CBX3-202ENST00000396386 FLT1P17948 1338 aa17.22■□□□□ 0.35
CBX3-202ENST00000396386 ADAMTSL1Q8N6G6 1762 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 TSPY3P0CV98 308 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 TSPY8P0CW00 308 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 SYKP43405 635 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 TOB1P50616 345 aaPredicted RBP17.21■□□□□ 0.35
CBX3-202ENST00000396386 SHC4Q6S5L8 630 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 CEP57L1Q8IYX8 460 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 MPNDQ8N594 471 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 KRI1Q8N9T8 703 aaKnown RBP17.21■□□□□ 0.35
CBX3-202ENST00000396386 ANKS1AQ92625 1134 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 TIGD1Q96MW7 591 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 TCP11L1Q9NUJ3 509 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 CEP131Q9UPN4 1083 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 HPSEQ9Y251 543 aa17.21■□□□□ 0.35
CBX3-202ENST00000396386 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.2■□□□□ 0.34
CBX3-202ENST00000396386 RIMBP2O15034 1052 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 ZRSR1Q15695 479 aaKnown RBP17.2■□□□□ 0.34
CBX3-202ENST00000396386 SRBD1Q8N5C6 995 aaKnown RBP17.2■□□□□ 0.34
CBX3-202ENST00000396386 OXER1Q8TDS5 423 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 SHISA4Q96DD7 197 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 SUGT1Q9Y2Z0 365 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 GOLGA6L19H0YKK7 550 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 RHBDL3P58872 404 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 GTF2IP78347 998 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 IQCB1Q15051 598 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 DPP8Q6V1X1 898 aaPredicted RBP17.2■□□□□ 0.34
CBX3-202ENST00000396386 ZNF444Q8N0Y2 327 aaPredicted RBP17.2■□□□□ 0.34
CBX3-202ENST00000396386 PNMA1Q8ND90 353 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 MASTLQ96GX5 879 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 TMX4Q9H1E5 349 aaPredicted RBP17.2■□□□□ 0.34
CBX3-202ENST00000396386 IL17RBQ9NRM6 502 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 KIAA1468Q9P260 1216 aa17.2■□□□□ 0.34
CBX3-202ENST00000396386 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.2■□□□□ 0.342e-8■□□□□ 8.9
CBX3-202ENST00000396386 hCG_1642624A0A1W2PR95 340 aa17.19■□□□□ 0.34
CBX3-202ENST00000396386 ZNF500O60304 480 aaPredicted RBP17.19■□□□□ 0.34
CBX3-202ENST00000396386 PLCD1P51178 756 aa17.19■□□□□ 0.34
CBX3-202ENST00000396386 C16orf86Q6ZW13 317 aa17.19■□□□□ 0.34
CBX3-202ENST00000396386 CCDC125Q86Z20 511 aa17.19■□□□□ 0.34
CBX3-202ENST00000396386 SLC44A5Q8NCS7 719 aa17.19■□□□□ 0.34
CBX3-202ENST00000396386 ZC3H12CQ9C0D7 883 aaKnown RBP17.19■□□□□ 0.34
CBX3-202ENST00000396386 NAT10Q9H0A0 1025 aaKnown RBP17.19■□□□□ 0.34
CBX3-202ENST00000396386 DAGLAQ9Y4D2 1042 aa17.19■□□□□ 0.34
CBX3-202ENST00000396386 GOLGA6L6A8MZA4 724 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 SCG2P13521 617 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 RASA1P20936 1047 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 GRM4Q14833 912 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 FBXW7Q969H0 707 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 CLIC6Q96NY7 704 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 FBXO2Q9UK22 296 aaPredicted RBP17.18■□□□□ 0.34
CBX3-202ENST00000396386 MORC2Q9Y6X9 1032 aaPredicted RBP17.18■□□□□ 0.34
CBX3-202ENST00000396386 ZNF646O15015 1829 aaPredicted RBP17.18■□□□□ 0.34
CBX3-202ENST00000396386 MSL1Q68DK7 614 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 ERCC4Q92889 916 aaPredicted RBP17.18■□□□□ 0.34
CBX3-202ENST00000396386 CABP5Q9NP86 173 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 PCDHB6Q9Y5E3 794 aa17.18■□□□□ 0.34
CBX3-202ENST00000396386 USP17L3A6NCW0 530 aa17.17■□□□□ 0.34
CBX3-202ENST00000396386 USP17L4A6NCW7 530 aa17.17■□□□□ 0.34
CBX3-202ENST00000396386 TPM3P06753 285 aa17.17■□□□□ 0.34
CBX3-202ENST00000396386 PTPREP23469 700 aa17.17■□□□□ 0.34
CBX3-202ENST00000396386 CDK8P49336 464 aa17.17■□□□□ 0.34
CBX3-202ENST00000396386 GNAQP50148 359 aa17.17■□□□□ 0.34
CBX3-202ENST00000396386 PFKFB3Q16875 520 aaPredicted RBP17.17■□□□□ 0.34
CBX3-202ENST00000396386 USP17L1Q7RTZ2 530 aa17.17■□□□□ 0.34
CBX3-202ENST00000396386 EYA3Q99504 573 aa17.17■□□□□ 0.34
CBX3-202ENST00000396386 TRIM75PA6NK02 468 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 BECN2A8MW95 431 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 BMP15O95972 392 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 ZNF75DP51815 510 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.16■□□□□ 0.34
CBX3-202ENST00000396386 PLA2G4DQ86XP0 818 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 FAM13BQ9NYF5 915 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 SARM1Q6SZW1 724 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 OLFM4Q6UX06 510 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 ZNF579Q8NAF0 562 aaKnown RBP17.16■□□□□ 0.34
CBX3-202ENST00000396386 TNFRSF25Q93038 417 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 TRIM5Q9C035 493 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 KCNH3Q9ULD8 1083 aa17.16■□□□□ 0.34
CBX3-202ENST00000396386 A0A087WWV3 80 aa17.15■□□□□ 0.34
CBX3-202ENST00000396386 FAM205CA6NFA0 338 aa17.15■□□□□ 0.34
CBX3-202ENST00000396386 G3V3G9 751 aa17.15■□□□□ 0.34
CBX3-202ENST00000396386 ATP2B1P20020 1258 aa17.15■□□□□ 0.34
CBX3-202ENST00000396386 NLRP12P59046 1061 aa17.15■□□□□ 0.34
CBX3-202ENST00000396386 NPY5RQ15761 445 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms