RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 FUT8Q9BYC5 575 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 ARMT1Q9H993 441 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 SAMSN1Q9NSI8 373 aaKnown RBP11.36□□□□□ -0.59
COL17A1-203ENST00000393211 RBM28Q9NW13 759 aaKnown RBP11.36□□□□□ -0.59
COL17A1-203ENST00000393211 RAB21Q9UL25 225 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 ZNF330Q9Y3S2 320 aaPredicted RBP11.36□□□□□ -0.59
COL17A1-203ENST00000393211 TACC3Q9Y6A5 838 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 SLC4A4Q9Y6R1 1079 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 ABCA3Q99758 1704 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 BCL9LQ86UU0 1499 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 MYH6P13533 1939 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 SOS2Q07890 1332 aaPredicted RBP11.36□□□□□ -0.59
COL17A1-203ENST00000393211 LRRC10BA6NIK2 292 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 MAP2K7O14733 419 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 MFAP3LO75121 409 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 ERLIN1O75477 346 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 CYP19A1P11511 503 aaPredicted RBP11.35□□□□□ -0.59
COL17A1-203ENST00000393211 HSPA2P54652 639 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 CHMP4BP1P59074 171 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 DPYDQ12882 1025 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 SEMA3FQ13275 785 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 RASGRF1Q13972 1273 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 SEC23AQ15436 765 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 FAM177A1Q8N128 213 aaPredicted RBP11.35□□□□□ -0.59
COL17A1-203ENST00000393211 SYNE4Q8N205 404 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 MSANTD4Q8NCY6 345 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 PIGBQ92521 554 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 ESR2Q92731 530 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 EXOC4Q96A65 974 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 DHX58Q96C10 678 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 PAGE5Q96GU1 130 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 PHF20Q9BVI0 1012 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 BRMS1Q9HCU9 246 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 CABP5Q9NP86 173 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 ITGB4P16144 1822 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.35□□□□□ -0.59
COL17A1-203ENST00000393211 GPTP24298 496 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 IL6STP40189 918 aaPredicted RBP11.35□□□□□ -0.59
COL17A1-203ENST00000393211 TRAPPC10P48553 1259 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 PPARAQ07869 468 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 RBL2Q08999 1139 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 NR5A1Q13285 461 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 WHAMMP3Q1A5X7 153 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 TRMT44Q8IYL2 757 aaKnown RBP11.35□□□□□ -0.59
COL17A1-203ENST00000393211 GBP3Q9H0R5 595 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 MRPL44Q9H9J2 332 aaKnown RBP11.35□□□□□ -0.59
COL17A1-203ENST00000393211 LIMA1Q9UHB6 759 aaKnown RBP11.35□□□□□ -0.59
COL17A1-203ENST00000393211 ASAP1Q9ULH1 1129 aa11.35□□□□□ -0.59
COL17A1-203ENST00000393211 DLEC1Q9Y238 1755 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 CTAGE9A4FU28 777 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 DISP2A7MBM2 1401 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 PPP1R3GB7ZBB8 358 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 UBE2Q2LH0YL09 131 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 TULP2O00295 520 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 SASH3O75995 380 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 SEC31AO94979 1220 aaKnown RBP11.34□□□□□ -0.59
COL17A1-203ENST00000393211 OAS2P29728 719 aaKnown RBP11.34□□□□□ -0.59
COL17A1-203ENST00000393211 PIP4K2BP78356 416 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 ZNF827Q17R98 1081 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 LONRF2Q1L5Z9 754 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 RAD9BQ6WBX8 426 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 BRINP3Q76B58 766 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 ANKRD20A12PQ8NF67 263 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 INCENPQ9NQS7 918 aa11.34□□□□□ -0.59
COL17A1-203ENST00000393211 NHSL1Q5SYE7 1610 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 BCL9O00512 1426 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 SOWAHDA6NJG2 315 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 EIF3JO75822 258 aaKnown RBP11.33□□□□□ -0.6
COL17A1-203ENST00000393211 DDAH1O94760 285 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 EVA1CP58658 441 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 FUT2Q10981 343 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 KARSQ15046 597 aaKnown RBP11.33□□□□□ -0.6
COL17A1-203ENST00000393211 PKN1Q16512 942 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 RRP12Q5JTH9 1297 aaKnown RBP11.33□□□□□ -0.6
COL17A1-203ENST00000393211 HDXQ7Z353 690 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 GRAMD1CQ8IYS0 662 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 LCORLQ8N3X6 602 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 IQUBQ8NA54 791 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 OXER1Q8TDS5 423 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 DESI2Q9BSY9 194 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 TOMM22Q9NS69 142 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 RMND1Q9NWS8 449 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 RWDD2AQ9UIY3 292 aa11.33□□□□□ -0.6
COL17A1-203ENST00000393211 ERICH4A6NGS2 130 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 TEX33O43247 280 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 FGRP09769 529 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 NT5C2P49902 561 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 ATP2C1P98194 919 aaPredicted RBP11.32□□□□□ -0.6
COL17A1-203ENST00000393211 SLC20A2Q08357 652 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 HSP90AA4PQ58FG1 418 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 CYP26C1Q6V0L0 522 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 USP49Q70CQ1 688 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 CATIPQ7Z7H3 387 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 NUP133Q8WUM0 1156 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 SYMPKQ92797 1274 aaKnown RBP11.32□□□□□ -0.6
COL17A1-203ENST00000393211 TNFRSF25Q93038 417 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 TNKSO95271 1327 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 LAMB2P55268 1798 aa11.32□□□□□ -0.6
COL17A1-203ENST00000393211 POLR3GO15318 223 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 PRKAB2O43741 272 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms