RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 TXLNGQ9NUQ3 528 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 SETD1BQ9UPS6 1966 aaKnown RBP12.8□□□□□ -0.36
VPS13A-205ENST00000376636 VGLL3A8MV65 326 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 FANCD2Q9BXW9 1451 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 SCYL1Q96KG9 808 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 PDE4DQ08499 809 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 MLKLQ8NB16 471 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 YY1AP1Q9H869 796 aa12.8□□□□□ -0.36
VPS13A-205ENST00000376636 A0A1B0GW55 424 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 DUX4L2P0CJ85 424 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 DUX4L3P0CJ86 424 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 DUX4L4P0CJ87 422 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 DUX4L5P0CJ88 424 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 DUX4L6P0CJ89 424 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 DUX4L7P0CJ90 424 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 GFAPP14136 432 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 IL9RQ01113 521 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 KRT80Q6KB66 452 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 SCYL3Q8IZE3 742 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 DUX4Q9UBX2 424 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 TPCN1Q9ULQ1 816 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 IL16Q14005 1332 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 PSDA5PKW4 1024 aaPredicted RBP12.79□□□□□ -0.36
VPS13A-205ENST00000376636 ANAPC5Q9UJX4 755 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 STAM2O75886 525 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 CASP2P42575 452 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 IL1RL1Q01638 556 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 KLHL7Q8IXQ5 586 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 FAM186BQ8IYM0 893 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 TRIM37O94972 964 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 CERS3Q8IU89 383 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.79□□□□□ -0.36
VPS13A-205ENST00000376636 TUBB6Q9BUF5 446 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 TTI1O43156 1089 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 TEX12Q9BXU0 123 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 ANGPTL2Q9UKU9 493 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 OATP04181 439 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 NEK2P51955 445 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 STX1BP61266 288 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 MAP7D3Q8IWC1 876 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 ANKRD42Q8N9B4 389 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 SERPINI1Q99574 410 aa12.79□□□□□ -0.36
VPS13A-205ENST00000376636 KLHL30Q0D2K2 578 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 PICALMQ13492 652 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 LONRF2Q1L5Z9 754 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 SNRKQ9NRH2 765 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 NOD1Q9Y239 953 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 PDE6AP16499 860 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 ECE1P42892 770 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 TRPC6Q9Y210 931 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 ADCY8P40145 1251 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 CWF19L2Q2TBE0 894 aaKnown RBP12.78□□□□□ -0.36
VPS13A-205ENST00000376636 RINT1Q6NUQ1 792 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 MRFAP1L1Q96HT8 127 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 MAP3K7O43318 606 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 GNGT1P63211 74 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 SKA2Q8WVK7 121 aaPredicted RBP12.78□□□□□ -0.36
VPS13A-205ENST00000376636 VPS16Q9H269 839 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 NOP14P78316 857 aaKnown RBP12.78□□□□□ -0.36
VPS13A-205ENST00000376636 SMC5Q8IY18 1101 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 USTQ9Y2C2 406 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 CFTRP13569 1480 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 SPDYE16A6NNV3 312 aaPredicted RBP12.78□□□□□ -0.36
VPS13A-205ENST00000376636 NOP56O00567 594 aaKnown RBP12.78□□□□□ -0.36
VPS13A-205ENST00000376636 SPDYE2Q495Y8 402 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 CCDC51Q96ER9 411 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 LRRC2Q9BYS8 371 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 SLC9C2Q5TAH2 1124 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 RAB20Q9NX57 234 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 BSPRYQ5W0U4 402 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 GPTP24298 496 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 TSC1Q92574 1164 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 LLPHQ9BRT6 129 aaKnown RBP12.78□□□□□ -0.36
VPS13A-205ENST00000376636 CARD6Q9BX69 1037 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 CCPG1Q9ULG6 757 aa12.78□□□□□ -0.36
VPS13A-205ENST00000376636 BEND3Q5T5X7 828 aa12.77□□□□□ -0.36
VPS13A-205ENST00000376636 ST13P4Q8IZP2 240 aaPredicted RBP12.77□□□□□ -0.36
VPS13A-205ENST00000376636 NBPF3Q9H094 633 aa12.77□□□□□ -0.36
VPS13A-205ENST00000376636 PACSIN2Q9UNF0 486 aaPredicted RBP12.77□□□□□ -0.36
VPS13A-205ENST00000376636 PTPDC1A2A3K4 754 aa12.77□□□□□ -0.36
VPS13A-205ENST00000376636 DEXIO95424 95 aa12.77□□□□□ -0.36
VPS13A-205ENST00000376636 NPR1P16066 1061 aa12.77□□□□□ -0.36
VPS13A-205ENST00000376636 ZKSCAN8Q15776 578 aaPredicted RBP12.77□□□□□ -0.36
VPS13A-205ENST00000376636 MRPL44Q9H9J2 332 aaKnown RBP12.77□□□□□ -0.36
VPS13A-205ENST00000376636 KRIT1O00522 736 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 SRGAP2BP0DMP2 458 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 HARSP12081 509 aaKnown RBP12.77□□□□□ -0.37
VPS13A-205ENST00000376636 DHX32Q7L7V1 743 aaKnown RBP12.77□□□□□ -0.37
VPS13A-205ENST00000376636 NYXQ9GZU5 481 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 ARHGEF35A5YM69 484 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 IL15P40933 162 aaPredicted RBP12.77□□□□□ -0.37
VPS13A-205ENST00000376636 TAF11Q15544 211 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 BCAS4Q8TDM0 211 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 KCNH3Q9ULD8 1083 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 PRPF6O94906 941 aaKnown RBP12.77□□□□□ -0.37
VPS13A-205ENST00000376636 SEPT2Q15019 361 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 CCDC92Q53HC0 331 aaPredicted RBP12.77□□□□□ -0.37
VPS13A-205ENST00000376636 TIAM1Q13009 1591 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 PASKQ96RG2 1323 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 KRT8P05787 483 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms