RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 LEKR1Q6ZMV7 388 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 KRT23Q9C075 422 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 AATFQ9NY61 560 aaKnown RBP eCLIP24■■□□□ 1.43
UPF3A-202ENST00000375299 ITIH6Q6UXX5 1313 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 ATP2B1P20020 1258 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 MYH6P13533 1939 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 GYPCP04921 128 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 AKNAD1Q5T1N1 836 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 SH3RF1Q7Z6J0 888 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 SRLQ86TD4 932 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 CRACR2BQ8N4Y2 399 aaPredicted RBP23.99■■□□□ 1.43
UPF3A-202ENST00000375299 OXER1Q8TDS5 423 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 NAPGQ99747 312 aaPredicted RBP23.99■■□□□ 1.43
UPF3A-202ENST00000375299 GBP3Q9H0R5 595 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 LCMT1Q9UIC8 334 aa23.99■■□□□ 1.43
UPF3A-202ENST00000375299 XIRP1Q702N8 1843 aaKnown RBP23.98■■□□□ 1.43
UPF3A-202ENST00000375299 A0A087X0B3 334 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 ITGA6P23229 1130 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 ARID4AP29374 1257 aaPredicted RBP23.98■■□□□ 1.43
UPF3A-202ENST00000375299 AFMP43652 599 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 WHAMMP3Q1A5X7 153 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 VGLL2Q8N8G2 317 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 ACRBPQ8NEB7 543 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 TTLL11Q8NHH1 800 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 CABP5Q9NP86 173 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 CNNM1Q9NRU3 951 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 CTAGE15A4D2H0 777 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 CTAGE8P0CG41 777 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 FXR1P51114 621 aaKnown RBP eCLIP23.98■■□□□ 1.43
UPF3A-202ENST00000375299 VSNL1P62760 191 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 CTAGE6Q86UF2 777 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 CTAGE4Q8IX94 777 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 CDC5LQ99459 802 aaKnown RBP23.98■■□□□ 1.43
UPF3A-202ENST00000375299 SUGCTQ9HAC7 445 aa23.98■■□□□ 1.43
UPF3A-202ENST00000375299 IVLP07476 585 aa23.97■■□□□ 1.43
UPF3A-202ENST00000375299 RHOXF2BP0C7M4 288 aa23.97■■□□□ 1.43
UPF3A-202ENST00000375299 PHKA1P46020 1223 aa23.97■■□□□ 1.43
UPF3A-202ENST00000375299 WTAPQ15007 396 aa23.97■■□□□ 1.43
UPF3A-202ENST00000375299 CCDC82Q8N4S0 544 aa23.97■■□□□ 1.43
UPF3A-202ENST00000375299 PAGE5Q96GU1 130 aa23.97■■□□□ 1.43
UPF3A-202ENST00000375299 RHOXF2Q9BQY4 288 aa23.97■■□□□ 1.43
UPF3A-202ENST00000375299 ZNF330Q9Y3S2 320 aaPredicted RBP23.97■■□□□ 1.43
UPF3A-202ENST00000375299 N4BP1O75113 896 aaKnown RBP23.96■■□□□ 1.43
UPF3A-202ENST00000375299 PIP4K2BP78356 416 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 MFSD6Q6ZSS7 791 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 TMTC1Q8IUR5 882 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 GREM2Q9H772 168 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 FAN1Q9Y2M0 1017 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 CCDC196A0A1B0GTZ2 297 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 PPP1R3GB7ZBB8 358 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 UQCRFS1P1P0C7P4 283 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 SART3Q15020 963 aaKnown RBP23.96■■□□□ 1.43
UPF3A-202ENST00000375299 CMTR1Q8N1G2 835 aaKnown RBP23.96■■□□□ 1.43
UPF3A-202ENST00000375299 MYO1AQ9UBC5 1043 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 RRP15Q9Y3B9 282 aaKnown RBP23.96■■□□□ 1.43
UPF3A-202ENST00000375299 CDHR2Q9BYE9 1310 aa23.96■■□□□ 1.43
UPF3A-202ENST00000375299 MYH3P11055 1940 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 DOCK2Q92608 1830 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 MBD4O95243 580 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 TUBBP07437 444 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 DPYDQ12882 1025 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 CASP8Q14790 479 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 C10orf67Q8IYJ2 551 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 GSDMAQ96QA5 445 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 ZKSCAN3Q9BRR0 538 aa23.95■■□□□ 1.43
UPF3A-202ENST00000375299 TOGARAM1Q9Y4F4 1720 aa23.95■■□□□ 1.42
UPF3A-202ENST00000375299 BCL9LQ86UU0 1499 aa23.95■■□□□ 1.42
UPF3A-202ENST00000375299 SOS2Q07890 1332 aaPredicted RBP23.95■■□□□ 1.42
UPF3A-202ENST00000375299 ANKRD18BA2A2Z9 1011 aa23.95■■□□□ 1.42
UPF3A-202ENST00000375299 TFRCP02786 760 aaKnown RBP23.95■■□□□ 1.42
UPF3A-202ENST00000375299 CASP1P29466 404 aa23.95■■□□□ 1.42
UPF3A-202ENST00000375299 ERVK-24P63145 666 aa23.95■■□□□ 1.42
UPF3A-202ENST00000375299 RRP12Q5JTH9 1297 aaKnown RBP23.95■■□□□ 1.42
UPF3A-202ENST00000375299 KIF6Q6ZMV9 814 aa23.95■■□□□ 1.42
UPF3A-202ENST00000375299 EPSTI1Q96J88 318 aa23.95■■□□□ 1.42
UPF3A-202ENST00000375299 TRIM75PA6NK02 468 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 TRIM66O15016 1216 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 RPS6KA5O75582 802 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 PDE8BO95263 885 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 SMYD4Q8IYR2 804 aaPredicted RBP23.94■■□□□ 1.42
UPF3A-202ENST00000375299 SYNE4Q8N205 404 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 FAM71BQ8TC56 605 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 STAG1Q8WVM7 1258 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 TMOD3Q9NYL9 352 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 WWC2Q6AWC2 1192 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 ABHD10Q9NUJ1 306 aa23.94■■□□□ 1.42
UPF3A-202ENST00000375299 ERICH2A1L162 156 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 ABL1P00519 1130 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 ARHGAP25P42331 645 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 RCAN1P53805 252 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 SYMPKQ92797 1274 aaKnown RBP23.93■■□□□ 1.42
UPF3A-202ENST00000375299 ARMT1Q9H993 441 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 ARAP2Q8WZ64 1704 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 MAGEB6Q8N7X4 407 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 TOMM22Q9NS69 142 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 CTNND2Q9UQB3 1225 aa23.93■■□□□ 1.42
UPF3A-202ENST00000375299 GSG1L2A8MUP6 293 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 HSP90B2PQ58FF3 399 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 CYP26C1Q6V0L0 522 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 FANCBQ8NB91 859 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms