RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 RBM27Q9P2N5 1060 aaKnown RBP12.64□□□□□ -0.39
CLRN3-201ENST00000368671 NR2E3Q9Y5X4 410 aa12.64□□□□□ -0.39
CLRN3-201ENST00000368671 DOCK3Q8IZD9 2030 aa12.63□□□□□ -0.39
CLRN3-201ENST00000368671 ZBTB7BO15156 539 aaPredicted RBP12.63□□□□□ -0.39
CLRN3-201ENST00000368671 PEX10O60683 326 aa12.63□□□□□ -0.39
CLRN3-201ENST00000368671 RLBP1P12271 317 aa12.63□□□□□ -0.39
CLRN3-201ENST00000368671 USP5P45974 858 aa12.63□□□□□ -0.39
CLRN3-201ENST00000368671 BACE1P56817 501 aa12.63□□□□□ -0.39
CLRN3-201ENST00000368671 MIGA1Q8NAN2 632 aa12.63□□□□□ -0.39
CLRN3-201ENST00000368671 EAF2Q96CJ1 260 aaPredicted RBP12.63□□□□□ -0.39
CLRN3-201ENST00000368671 PAK6Q9NQU5 681 aaPredicted RBP12.63□□□□□ -0.39
CLRN3-201ENST00000368671 ZBTB21Q9ULJ3 1066 aa12.63□□□□□ -0.39
CLRN3-201ENST00000368671 NOP58Q9Y2X3 529 aaKnown RBP12.63□□□□□ -0.39
CLRN3-201ENST00000368671 NDUFB9Q9Y6M9 179 aa12.63□□□□□ -0.39
CLRN3-201ENST00000368671 C19orf81C9J6K1 198 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 USP17L10C9JJH3 530 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 EVI5O60447 810 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 HMGCRP04035 888 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 HERVK_113P62684 666 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 TRIM32Q13049 653 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 MAGEB6Q8N7X4 407 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 PAWRQ96IZ0 340 aaKnown RBP12.62□□□□□ -0.39
CLRN3-201ENST00000368671 P2RX7Q99572 595 aaKnown RBP12.62□□□□□ -0.39
CLRN3-201ENST00000368671 CRISPLD2Q9H0B8 497 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 MORF4L1Q9UBU8 362 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 ALPK3Q96L96 1907 aa12.62□□□□□ -0.39
CLRN3-201ENST00000368671 IGSF3O75054 1194 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 CYP2B6P20813 491 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 HOXA7P31268 230 aaPredicted RBP12.61□□□□□ -0.39
CLRN3-201ENST00000368671 ZYXQ15942 572 aaKnown RBP12.61□□□□□ -0.39
CLRN3-201ENST00000368671 CEP85Q6P2H3 762 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 METTL16Q86W50 562 aaKnown RBP12.61□□□□□ -0.39
CLRN3-201ENST00000368671 DIS3LQ8TF46 1054 aaKnown RBP12.61□□□□□ -0.39
CLRN3-201ENST00000368671 TRIB2Q92519 343 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 ANTXR1Q9H6X2 564 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 TXNRD2Q9NNW7 524 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 HMX1Q9NP08 348 aaPredicted RBP12.61□□□□□ -0.39
CLRN3-201ENST00000368671 GINM1Q9NU53 330 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 GJD2Q9UKL4 321 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 EXOC6BQ9Y2D4 811 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 DDX60LQ5H9U9 1706 aaKnown RBP12.61□□□□□ -0.39
CLRN3-201ENST00000368671 NAV1Q8NEY1 1877 aa12.61□□□□□ -0.39
CLRN3-201ENST00000368671 GH2P01242 217 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 CAPN2P17655 700 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 USP17L2Q6R6M4 530 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 TMEM92Q6UXU6 159 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 NECAB2Q7Z6G3 386 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 AACSQ86V21 672 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 CCAR1Q8IX12 1150 aaKnown RBP12.6□□□□□ -0.39
CLRN3-201ENST00000368671 GPRC5AQ8NFJ5 357 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 FEZ1Q99689 392 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 NUDT12Q9BQG2 462 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 PAGR1Q9BTK6 254 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 RPTORQ8N122 1335 aa12.6□□□□□ -0.39
CLRN3-201ENST00000368671 MAP3K12Q12852 859 aa12.59□□□□□ -0.39
CLRN3-201ENST00000368671 PDE3AQ14432 1141 aa12.59□□□□□ -0.39
CLRN3-201ENST00000368671 ERC1Q8IUD2 1116 aa12.59□□□□□ -0.39
CLRN3-201ENST00000368671 PANK1Q8TE04 598 aa12.59□□□□□ -0.39
CLRN3-201ENST00000368671 CWC22Q9HCG8 908 aaKnown RBP12.59□□□□□ -0.39
CLRN3-201ENST00000368671 IL1RAPL2Q9NP60 686 aa12.59□□□□□ -0.39
CLRN3-201ENST00000368671 EMILIN3Q9NT22 766 aa12.59□□□□□ -0.39
CLRN3-201ENST00000368671 RBPJLQ9UBG7 517 aa12.59□□□□□ -0.39
CLRN3-201ENST00000368671 ERVK-9P63128 1117 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 ERVK-24P63145 666 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 RAB3GAP1Q15042 981 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 Q3C1V9 767 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 TTC6Q86TZ1 520 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 CERS3Q8IU89 383 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 C7orf61Q8IZ16 206 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 ANKLE1Q8NAG6 615 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 SOCS4Q8WXH5 440 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 BCL11AQ9H165 835 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 PORCNQ9H237 461 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 PRO3102Q9H379 93 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 SERPINB13Q9UIV8 391 aa12.58□□□□□ -0.4
CLRN3-201ENST00000368671 APBB1O00213 710 aa12.57□□□□□ -0.4
CLRN3-201ENST00000368671 ZKSCAN1P17029 563 aaPredicted RBP12.57□□□□□ -0.4
CLRN3-201ENST00000368671 MAPK4P31152 587 aa12.57□□□□□ -0.4
CLRN3-201ENST00000368671 ABCB5Q2M3G0 1257 aa12.57□□□□□ -0.4
CLRN3-201ENST00000368671 CERKLQ49MI3 558 aaPredicted RBP12.57□□□□□ -0.4
CLRN3-201ENST00000368671 TATDN1Q6P1N9 297 aa12.57□□□□□ -0.4
CLRN3-201ENST00000368671 GPR142Q7Z601 462 aa12.57□□□□□ -0.4
CLRN3-201ENST00000368671 GTF3C2Q8WUA4 911 aaPredicted RBP12.57□□□□□ -0.4
CLRN3-201ENST00000368671 EHD4Q9H223 541 aa12.57□□□□□ -0.4
CLRN3-201ENST00000368671 C11orf49Q9H6J7 331 aa12.57□□□□□ -0.4
CLRN3-201ENST00000368671 STAP2Q9UGK3 403 aa12.57□□□□□ -0.4
CLRN3-201ENST00000368671 FRMPD3Q5JV73 1810 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 MAGEB6P1A0A0J9YX57 407 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L15C9J2P7 530 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L13C9JLJ4 530 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L11C9JVI0 530 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L18D6R9N7 530 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L22D6RA61 530 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L17D6RBQ6 530 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L19D6RCP7 530 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L20D6RJB6 530 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 POLR3DP05423 398 aaPredicted RBP12.56□□□□□ -0.4
CLRN3-201ENST00000368671 RGS2P41220 211 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 PLCD1P51178 756 aa12.56□□□□□ -0.4
CLRN3-201ENST00000368671 USP17L24Q0WX57 530 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms