RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 FAM98CQ17RN3 349 aaKnown RBP11.28□□□□□ -0.6
CLIP1-202ENST00000358808 SCYL1Q96KG9 808 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 VPS37BQ9H9H4 285 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 PRKAG2Q9UGJ0 569 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 H0YIN7 160 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 PHLDB2Q86SQ0 1253 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 USP48Q86UV5 1035 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 VSIG1Q86XK7 387 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 MYCT1Q8N699 235 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 USP21Q9UK80 565 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 DENND2AQ9ULE3 1009 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 GCC2Q8IWJ2 1684 aa11.28□□□□□ -0.6
CLIP1-202ENST00000358808 KRT15P19012 456 aa11.27□□□□□ -0.6
CLIP1-202ENST00000358808 GLG1Q92896 1179 aa11.27□□□□□ -0.6
CLIP1-202ENST00000358808 PAGR1Q9BTK6 254 aa11.27□□□□□ -0.6
CLIP1-202ENST00000358808 ABCA9Q8IUA7 1624 aa11.27□□□□□ -0.6
CLIP1-202ENST00000358808 MBD5Q9P267 1494 aa11.27□□□□□ -0.6
CLIP1-202ENST00000358808 BUB1BO60566 1050 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-202ENST00000358808 TBC1D8O95759 1140 aa11.27□□□□□ -0.6
CLIP1-202ENST00000358808 YWHAEP62258 255 aaKnown RBP11.27□□□□□ -0.6
CLIP1-202ENST00000358808 MTHFSDQ2M296 383 aaKnown RBP11.27□□□□□ -0.6
CLIP1-202ENST00000358808 ST7Q9NRC1 585 aa11.27□□□□□ -0.6
CLIP1-202ENST00000358808 MYO1AQ9UBC5 1043 aa11.27□□□□□ -0.6
CLIP1-202ENST00000358808 PLEKHG1Q9ULL1 1385 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 ARHGEF12Q9NZN5 1544 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 APBA3O96018 575 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 C8orf74Q6P047 294 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 CNGA4Q8IV77 575 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 CCDC68Q9H2F9 335 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 MAP3K5Q99683 1374 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 PZPP20742 1482 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 STK25O00506 426 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 IGSF3O75054 1194 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 BAG6P46379 1132 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 TUBB4BP68371 445 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 TSNAXIP1Q2TAA8 658 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 SCYL2Q6P3W7 929 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 SESTD1Q86VW0 696 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 SPDYE1Q8NFV5 336 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-202ENST00000358808 RBSNQ9H1K0 784 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 TRPC6Q9Y210 931 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 STK24Q9Y6E0 443 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 USH1CQ9Y6N9 552 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 CASP2P42575 452 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 TXKP42681 527 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 RYBPQ8N488 228 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-202ENST00000358808 UIMC1Q96RL1 719 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 IFNKQ9P0W0 207 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 SLAIN2Q9P270 581 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 CPSF2Q9P2I0 782 aaKnown RBP11.27□□□□□ -0.61
CLIP1-202ENST00000358808 ZRANB1Q9UGI0 708 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 ARHGEF10O15013 1369 aa11.27□□□□□ -0.61
CLIP1-202ENST00000358808 GOLGA8CPA6NN73 597 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 PPP1R2P41236 205 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 MAST3O60307 1309 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 KDM5CP41229 1560 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 PPARDQ03181 441 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 PDCD7Q8N8D1 485 aaKnown RBP11.26□□□□□ -0.61
CLIP1-202ENST00000358808 PPP4R1Q8TF05 950 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 RSAD2Q8WXG1 361 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 CCDC87Q9NVE4 849 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 AKR1B15C9JRZ8 316 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-202ENST00000358808 SORBS3O60504 671 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 TNNI1P19237 187 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 TBC1D8BQ0IIM8 1120 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 SYT10Q6XYQ8 523 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 TBC1D7Q9P0N9 293 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 BCAP29Q9UHQ4 241 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 GGA1Q9UJY5 639 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 EXOC3O60645 756 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 TUBB4AP04350 444 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 DNM1Q05193 864 aaKnown RBP11.26□□□□□ -0.61
CLIP1-202ENST00000358808 PPP2R5AQ15172 486 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 PIK3AP1Q6ZUJ8 805 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 HDXQ7Z353 690 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 CTAGE3PQ8IX95 158 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 RNF217Q8TC41 542 aa11.26□□□□□ -0.61
CLIP1-202ENST00000358808 ZNF277Q9NRM2 450 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-202ENST00000358808 GNL1P36915 607 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-202ENST00000358808 MLXIPQ9HAP2 919 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 DDX21Q9NR30 783 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLIP1-202ENST00000358808 CSADQ9Y600 493 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 MBD4O95243 580 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 GCNT3O95395 438 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 ATF7P17544 494 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-202ENST00000358808 KCNA4P22459 653 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 ZNF449Q6P9G9 518 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 FAM170AA1A519 330 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 CCDC105Q8IYK2 499 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 HDAC11Q96DB2 347 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 MMS19Q96T76 1030 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 ERVK-7P63135 1459 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 RNMTO43148 476 aaKnown RBP11.25□□□□□ -0.61
CLIP1-202ENST00000358808 F13A1P00488 732 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 SAT1P21673 171 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 NIM1KQ8IY84 436 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 DEPTORQ8TB45 409 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 FAM8A1Q9UBU6 413 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 HOXC9P31274 260 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 PDE6BP35913 854 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms