RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 FBXO38Q6PIJ6 1188 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 UBL4BQ8N7F7 174 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 XAGE2Q96GT9 111 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 TCHPQ9BT92 498 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 METTL22Q9BUU2 404 aaPredicted RBP21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 PLA2R1Q13018 1463 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 ERCC5P28715 1186 aaPredicted RBP21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 CABLES1Q8TDN4 633 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 PFKFB2O60825 505 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 TERF2Q15554 542 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 PSMD1Q99460 953 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 DSCC1Q9BVC3 393 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 HNRNPH2P55795 449 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 ADCK5Q3MIX3 580 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 FCHSD1Q86WN1 690 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 BABAM1Q9NWV8 329 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 FRMD4BQ9Y2L6 1034 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 CFAP157Q5JU67 520 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 TTC19Q6DKK2 380 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 C11orf57Q6ZUT1 292 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 RNF10Q8N5U6 811 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 SPTLC3Q9NUV7 552 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 HYOU1Q9Y4L1 999 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 MAGI2Q86UL8 1455 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 HSPA2P54652 639 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 PICALMQ13492 652 aa21.69■■□□□ 1.06
CCDC88B-202ENST00000356786 A0A087WWV3 80 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 KCNJ18B7U540 433 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 RGS16O15492 202 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 FLOT1O75955 427 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 ATP5JP18859 108 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 KCNJ12Q14500 433 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 VPS52Q8N1B4 723 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 ZNF594Q96JF6 807 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 hCG_1642624A0A1W2PR95 340 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 NOL3O60936 208 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 LTKP29376 864 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 NBPF6Q5VWK0 638 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 DENND2CQ68D51 928 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 NBPF5PQ86XG9 351 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 FAM89AQ96GI7 184 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 NBPF4Q96M43 638 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 CSRNP2Q9H175 543 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 VCX3BQ9H321 246 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 HDAC9Q9UKV0 1011 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 SFMBT2Q5VUG0 894 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 DYMQ7RTS9 669 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 CTTNBP2NLQ9P2B4 639 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 EPN1Q9Y6I3 576 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 CCDC151A5D8V7 595 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 TCP1P17987 556 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 IRX5P78411 483 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 DPCR1Q3MIW9 517 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 NBPF14Q5TI25 921 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 MGARPQ8TDB4 240 aa21.68■■□□□ 1.06
CCDC88B-202ENST00000356786 PEX19P40855 299 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 CLUL1Q15846 466 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 WDR78Q5VTH9 848 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 EXOC4Q96A65 974 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 PCDHA5Q9Y5H7 936 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 HIP1RO75146 1068 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 HERC4Q5GLZ8 1057 aaPredicted RBP21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 KCTD16Q68DU8 428 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 SLC35F6Q8N357 371 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 PLCB1Q9NQ66 1216 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 JRKLQ9Y4A0 524 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 RNF40O75150 1001 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 HHATQ5VTY9 493 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 EFCAB13Q8IY85 973 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 CCDC105Q8IYK2 499 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 RAB3IL1Q8TBN0 382 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 EAF2Q96CJ1 260 aaPredicted RBP21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 VPS54Q9P1Q0 977 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 CCNT1O60563 726 aaKnown RBP21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 CLTAP09496 248 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 GOLGA8FQ08AF8 430 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 GOLGA8DPQ0D2H9 430 aa21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 NIP7Q9Y221 180 aaKnown RBP eCLIP21.67■■□□□ 1.06
CCDC88B-202ENST00000356786 ADD1P35611 737 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 ANKRD42Q8N9B4 389 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 SLC8A1P32418 973 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 HSPA1LP34931 641 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 CCDC62Q6P9F0 684 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 UNC5CLQ8IV45 518 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 PARP1P09874 1014 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 ARID4AP29374 1257 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 NOSTRINQ8IVI9 506 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 TRIML1Q8N9V2 468 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 CLIC6Q96NY7 704 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 NLRP3Q96P20 1036 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 LSG1Q9H089 658 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 LRWD1Q9UFC0 647 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 ZNF521Q96K83 1311 aa21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 F8W031 263 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-202ENST00000356786 A0A1W2PQ27 194 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 A0A1W2PQ64 194 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 A0A1W2PQD8 194 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 NCBP1Q09161 790 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 SPATA1Q5VX52 437 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 CFAP57Q96MR6 1250 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms