RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TMEM60Q9H2L4 133 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 BAG5Q9UL15 447 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 CCDC159P0C7I6 412 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 ASIC3Q9UHC3 531 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 MAPK13O15264 365 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 NR1D1P20393 614 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 VIPAS39Q9H9C1 493 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 RANBP1P43487 201 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 VPS41P49754 854 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 CRACR2BQ8N4Y2 399 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-203ENST00000353578 SNX29Q8TEQ0 813 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 EEF2P13639 858 aaKnown RBP13.88□□□□□ -0.19
COL6A3-203ENST00000353578 TDRD7Q8NHU6 1098 aaKnown RBP13.88□□□□□ -0.19
COL6A3-203ENST00000353578 ZFYVE9O95405 1425 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 PYGBP11216 843 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 E2F4Q16254 413 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 PARP9Q8IXQ6 854 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 ANKRD35Q8N283 1001 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 ADAM21Q9UKJ8 722 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 TBC1D8BQ0IIM8 1120 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 WTAPQ15007 396 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 SLC44A4Q53GD3 710 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 CCDC13Q8IYE1 715 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 IFIT1P09914 478 aaKnown RBP13.87□□□□□ -0.19
COL6A3-203ENST00000353578 ELF1P32519 619 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 ZNF148Q9UQR1 794 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 ZC3H18Q86VM9 953 aaKnown RBP13.87□□□□□ -0.19
COL6A3-203ENST00000353578 SRRM1Q8IYB3 904 aaKnown RBP13.87□□□□□ -0.19
COL6A3-203ENST00000353578 LRGUKQ96M69 825 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 SCYL3Q8IZE3 742 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 OR8K1Q8NGG5 319 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 ZKSCAN3Q9BRR0 538 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 ADCY2Q08462 1091 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 INAQ16352 499 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.87□□□□□ -0.19
COL6A3-203ENST00000353578 MLECQ14165 292 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 NOC4LQ9BVI4 516 aaKnown RBP13.87□□□□□ -0.19
COL6A3-203ENST00000353578 KCNH3Q9ULD8 1083 aa13.87□□□□□ -0.19
COL6A3-203ENST00000353578 LRRIQ3A6PVS8 624 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 BCRP11274 1271 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 SLC5A1P13866 664 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 MCF2P10911 925 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 MCMDC2Q4G0Z9 681 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 AMFRQ9UKV5 643 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 ATAD2BQ9ULI0 1458 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 DEAF1O75398 565 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 HNRNPH2P55795 449 aaKnown RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 CACYBPQ9HB71 228 aaKnown RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 IL1RAPL1Q9NZN1 696 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 PDP2Q9P2J9 529 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 SPG7Q9UQ90 795 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 GON4LQ3T8J9 2241 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 SPAG7O75391 227 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 MRPS9P82933 396 aaKnown RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 TTLL7Q6ZT98 887 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 DHX32Q7L7V1 743 aaKnown RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 FAM186BQ8IYM0 893 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 PDZD8Q8NEN9 1154 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 BLMP54132 1417 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 MMEP08473 750 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 MICU3Q86XE3 530 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 RGS12O14924 1447 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 KDM1AO60341 852 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 CCDC82Q8N4S0 544 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 PHKBQ93100 1093 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 IDH1O75874 414 aaKnown RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 LONP1P36776 959 aaKnown RBP13.86□□□□□ -0.19
COL6A3-203ENST00000353578 KCNJ6P48051 423 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 ASIC2Q16515 512 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 VTI1AQ96AJ9 217 aa13.86□□□□□ -0.19
COL6A3-203ENST00000353578 AP2B1P63010 937 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 SFSWAPQ12872 951 aaKnown RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 CCDC105Q8IYK2 499 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 KLC4Q9NSK0 619 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 POLR3AO14802 1390 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 TARSL2A2RTX5 802 aaKnown RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 CAVIN4Q5BKX8 364 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 SFMBT2Q5VUG0 894 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 HOOK2Q96ED9 719 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 TSC22D4Q9Y3Q8 395 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 CALUO43852 315 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 CLCN6P51797 869 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 CCT2P78371 535 aaKnown RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 EPRSP07814 1512 aaKnown RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 C4BPBP20851 252 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 YY1P25490 414 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 SLC26A6Q9BXS9 759 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 IL1RAPL2Q9NP60 686 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 KCNG1Q9UIX4 513 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 SRLQ86TD4 932 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 PPP1R13BQ96KQ4 1090 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 NOC2LQ9Y3T9 749 aaKnown RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 IKBKBO14920 756 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 CTNND1O60716 968 aaKnown RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 MAP3K10Q02779 954 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 KIF9Q9HAQ2 790 aa13.85□□□□□ -0.19
COL6A3-203ENST00000353578 DNAJC17Q9NVM6 304 aaKnown RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 DBF4Q9UBU7 674 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 ARL1P40616 181 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-203ENST00000353578 DCTPP1Q9H773 170 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms