RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 GOLGA6CA6NDK9 693 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 PDE2AO00408 941 aaPredicted RBP7.67□□□□□ -1.18
VPS39-202ENST00000348544 PSMD14O00487 310 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 EIF3HO15372 352 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS39-202ENST00000348544 GOLGA6DP0CG33 693 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 GUCY1A2P33402 732 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 FNTAP49354 379 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 FKBP4Q02790 459 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS39-202ENST00000348544 MKRN4PQ13434 485 aaPredicted RBP7.67□□□□□ -1.18
VPS39-202ENST00000348544 MAP9Q49MG5 647 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 TTC19Q6DKK2 380 aaPredicted RBP7.67□□□□□ -1.18
VPS39-202ENST00000348544 ANKRD20A12PQ8NF67 263 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 BCAS4Q8TDM0 211 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 ZNF594Q96JF6 807 aaPredicted RBP7.67□□□□□ -1.18
VPS39-202ENST00000348544 CAPZA3Q96KX2 299 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 GPR108Q9NPR9 543 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 GOLGA6AQ9NYA3 693 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 CEP83Q9Y592 693 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 ADAMTS7Q9UKP4 1686 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 ARFGEF2Q9Y6D5 1785 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 PPP1R3GB7ZBB8 358 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 ZNF213O14771 459 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 CDKL5O76039 1030 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 A1BGP04217 495 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 DSG3P32926 999 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 PPFIA1Q13136 1202 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 SCARF1Q14162 830 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 KRT31Q15323 416 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 ZNF790Q6PG37 636 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 CYP26C1Q6V0L0 522 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 CCNI2Q6ZMN8 369 aaPredicted RBP7.67□□□□□ -1.18
VPS39-202ENST00000348544 PRPF38AQ8NAV1 312 aaKnown RBP7.67□□□□□ -1.18
VPS39-202ENST00000348544 HINFPQ9BQA5 517 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 CRACR2AQ9BSW2 395 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 CSRNP2Q9H175 543 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 DONSONQ9NYP3 566 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 KCNJ14Q9UNX9 436 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 SAMM50Q9Y512 469 aa7.67□□□□□ -1.18
VPS39-202ENST00000348544 MYO1FO00160 1098 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 INPP5BP32019 993 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 IARSP41252 1262 aaKnown RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 AFMP43652 599 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 HERVK_113P62684 666 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 GNGT1P63211 74 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 CACNB1Q02641 598 aaPredicted RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 NBPF14Q5TI25 921 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 PAPD7Q5XG87 772 aaKnown RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 AENQ8WTP8 325 aaKnown RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 RRP36Q96EU6 259 aaKnown RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 XAGE2Q96GT9 111 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 CTAGE1Q96RT6 745 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 SH3GL2Q99962 352 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 CAPS2Q9BXY5 557 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 PUS3Q9BZE2 481 aaKnown RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 GOLGA6BA6NDN3 693 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 SEMA3EO15041 775 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 ZNF185O15231 689 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 GPAA1O43292 621 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 NDUFA10O95299 355 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 ADORA1P30542 326 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 ATP6V1AP38606 617 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 NR5A1Q13285 461 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 TRIM29Q14134 588 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 PI16Q6UXB8 463 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 DIS3L2Q8IYB7 885 aaKnown RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 ZNF579Q8NAF0 562 aaKnown RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 SLC26A6Q9BXS9 759 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 SRPRBQ9Y5M8 271 aaKnown RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 SAR1BQ9Y6B6 198 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 EPN1Q9Y6I3 576 aaPredicted RBP7.66□□□□□ -1.18
VPS39-202ENST00000348544 WDR17Q8IZU2 1322 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 TMEM94Q12767 1356 aa7.66□□□□□ -1.18
VPS39-202ENST00000348544 B4E1Z4 1266 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 MMP1P03956 469 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 MCM3P25205 808 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 KRT9P35527 623 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 IL15P40933 162 aaPredicted RBP7.65□□□□□ -1.18
VPS39-202ENST00000348544 EZH2Q15910 746 aaKnown RBP7.65□□□□□ -1.18
VPS39-202ENST00000348544 FILIP1LQ4L180 1135 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 CPLX2Q6PUV4 134 aaKnown RBP7.65□□□□□ -1.18
VPS39-202ENST00000348544 SH3RF1Q7Z6J0 888 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 APPBP2Q92624 585 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 ZNF496Q96IT1 587 aaPredicted RBP7.65□□□□□ -1.18
VPS39-202ENST00000348544 NUP88Q99567 741 aaPredicted RBP7.65□□□□□ -1.18
VPS39-202ENST00000348544 VPS16Q9H269 839 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 INCENPQ9NQS7 918 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 TAB2Q9NYJ8 693 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 LIMA1Q9UHB6 759 aaKnown RBP7.65□□□□□ -1.18
VPS39-202ENST00000348544 SUFUQ9UMX1 484 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 CTNND2Q9UQB3 1225 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 CAPN7Q9Y6W3 813 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 LAMB4A4D0S4 1761 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 SLIT3O75094 1523 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 CCDC196A0A1B0GTZ2 297 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 RCCD1A6NED2 376 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 GOLGA8AA7E2F4 631 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 EYA2O00167 538 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 N4BP3O15049 544 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 ZBTB43O43298 467 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 C2orf54Q08AI8 447 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms