RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PHKA1P46020 1223 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 FXR1P51114 621 aaKnown RBP eCLIP25.42■■□□□ 1.661e-6■■■□□ 15.7
TRIM28-202ENST00000341753 HDXQ7Z353 690 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 AIDAQ96BJ3 306 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.42■■□□□ 1.66
TRIM28-202ENST00000341753 SYNRGQ9UMZ2 1314 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 PDE6AP16499 860 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 CDC25AP30304 524 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 CEP112Q8N8E3 955 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 TSPYL1Q9H0U9 437 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 RASSF4Q9H2L5 321 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 ACTN2P35609 894 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 SGMS1Q86VZ5 419 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 EPB41L4AQ9HCS5 686 aaPredicted RBP25.41■■□□□ 1.66
TRIM28-202ENST00000341753 RNF216Q9NWF9 866 aaPredicted RBP25.41■■□□□ 1.66
TRIM28-202ENST00000341753 RSPH14Q9UHP6 348 aa25.41■■□□□ 1.66
TRIM28-202ENST00000341753 MFAP3LO75121 409 aa25.4■■□□□ 1.66
TRIM28-202ENST00000341753 NUP133Q8WUM0 1156 aa25.4■■□□□ 1.66
TRIM28-202ENST00000341753 CTAGE9A4FU28 777 aa25.4■■□□□ 1.66
TRIM28-202ENST00000341753 CCDC102AQ96A19 550 aa25.4■■□□□ 1.66
TRIM28-202ENST00000341753 CWC15Q9P013 229 aaKnown RBP25.4■■□□□ 1.66
TRIM28-202ENST00000341753 RILPL1Q5EBL4 403 aa25.39■■□□□ 1.66
TRIM28-202ENST00000341753 RGS22Q8NE09 1264 aa25.39■■□□□ 1.66
TRIM28-202ENST00000341753 ADD3Q9UEY8 706 aaKnown RBP25.39■■□□□ 1.66
TRIM28-202ENST00000341753 L1RE1Q9UN81 338 aa25.39■■□□□ 1.66
TRIM28-202ENST00000341753 GYPCP04921 128 aa25.39■■□□□ 1.65
TRIM28-202ENST00000341753 IFNAR1P17181 557 aa25.39■■□□□ 1.65
TRIM28-202ENST00000341753 STRBPQ96SI9 672 aaKnown RBP25.39■■□□□ 1.65
TRIM28-202ENST00000341753 RRP15Q9Y3B9 282 aaKnown RBP25.39■■□□□ 1.65
TRIM28-202ENST00000341753 hCG_1642624A0A1W2PR95 340 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 TNNT3P45378 269 aaPredicted RBP25.38■■□□□ 1.65
TRIM28-202ENST00000341753 RTN1Q16799 776 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 SPATA1Q5VX52 437 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 ELOA2Q8IYF1 753 aaPredicted RBP25.38■■□□□ 1.65
TRIM28-202ENST00000341753 TRIML1Q8N9V2 468 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 NOA1Q8NC60 698 aaKnown RBP25.38■■□□□ 1.65
TRIM28-202ENST00000341753 NAPBQ9H115 298 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 SRPRBQ9Y5M8 271 aaKnown RBP25.38■■□□□ 1.65
TRIM28-202ENST00000341753 ERCC5P28715 1186 aaPredicted RBP25.38■■□□□ 1.65
TRIM28-202ENST00000341753 LEKR1Q6ZMV7 388 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 TRIM22Q8IYM9 498 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 VGLL2Q8N8G2 317 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 MSANTD4Q8NCY6 345 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 ARMT1Q9H993 441 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 PSD3Q9NYI0 1048 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 RAB21Q9UL25 225 aa25.38■■□□□ 1.65
TRIM28-202ENST00000341753 RNF225M0QZC1 329 aaPredicted RBP25.37■■□□□ 1.65
TRIM28-202ENST00000341753 NCAPH2Q6IBW4 605 aa25.37■■□□□ 1.65
TRIM28-202ENST00000341753 RASGRP2Q7LDG7 609 aa25.37■■□□□ 1.65
TRIM28-202ENST00000341753 SRLQ86TD4 932 aa25.37■■□□□ 1.65
TRIM28-202ENST00000341753 HNRNPLLQ8WVV9 542 aaKnown RBP25.37■■□□□ 1.65
TRIM28-202ENST00000341753 CDHR2Q9BYE9 1310 aa25.37■■□□□ 1.65
TRIM28-202ENST00000341753 PRKAB2O43741 272 aa25.37■■□□□ 1.65
TRIM28-202ENST00000341753 STK36Q9NRP7 1315 aa25.37■■□□□ 1.65
TRIM28-202ENST00000341753 DISP2A7MBM2 1401 aa25.37■■□□□ 1.65
TRIM28-202ENST00000341753 MBD4O95243 580 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 ERVK-24P63145 666 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 DPYDQ12882 1025 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 CASP8Q14790 479 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 IFNL3Q8IZI9 196 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 WASF1Q92558 559 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 NHSL1Q5SYE7 1610 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 ERLIN1O75477 346 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 PBX1P40424 430 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 USP5P45974 858 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 CUL4BQ13620 913 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 SPATA20Q8TB22 786 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 PLEKHA4Q9H4M7 779 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 FBXO3Q9UK99 471 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 ANKRD65E5RJM6 399 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 PDE8BO95263 885 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 LIFRP42702 1097 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 UBE3CQ15386 1083 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 EARS2Q5JPH6 523 aaKnown RBP25.36■■□□□ 1.65
TRIM28-202ENST00000341753 SUSD4Q5VX71 490 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 FOXP1Q9H334 677 aaPredicted RBP25.36■■□□□ 1.65
TRIM28-202ENST00000341753 CTNND2Q9UQB3 1225 aa25.36■■□□□ 1.65
TRIM28-202ENST00000341753 PAGE5Q96GU1 130 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 NAA15Q9BXJ9 866 aaKnown RBP25.35■■□□□ 1.65
TRIM28-202ENST00000341753 TRIM10Q9UDY6 481 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 MYO5AQ9Y4I1 1855 aaKnown RBP25.35■■□□□ 1.65
TRIM28-202ENST00000341753 CTAGE15A4D2H0 777 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 WNT7AO00755 349 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 PDE8AO60658 829 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 CTAGE8P0CG41 777 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 CTAGE6Q86UF2 777 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 CTAGE4Q8IX94 777 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 NAPGQ99747 312 aaPredicted RBP25.35■■□□□ 1.65
TRIM28-202ENST00000341753 SLF1Q9BQI6 1058 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 VPS16Q9H269 839 aa25.35■■□□□ 1.65
TRIM28-202ENST00000341753 TCRBV5S4A2TA0A5A2 114 aa25.34■■□□□ 1.65
TRIM28-202ENST00000341753 EIF3JO75822 258 aaKnown RBP25.34■■□□□ 1.65
TRIM28-202ENST00000341753 KANK3Q6NY19 840 aa25.34■■□□□ 1.65
TRIM28-202ENST00000341753 MAGEB6Q8N7X4 407 aa25.34■■□□□ 1.65
TRIM28-202ENST00000341753 SLIT2O94813 1529 aa25.34■■□□□ 1.65
TRIM28-202ENST00000341753 LRRIQ3A6PVS8 624 aaPredicted RBP25.34■■□□□ 1.65
TRIM28-202ENST00000341753 CDKAL1Q5VV42 579 aa25.34■■□□□ 1.65
TRIM28-202ENST00000341753 SYMPKQ92797 1274 aaKnown RBP25.34■■□□□ 1.65
TRIM28-202ENST00000341753 SHISA4Q96DD7 197 aa25.34■■□□□ 1.65
TRIM28-202ENST00000341753 BLZF1Q9H2G9 400 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms