RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 BSPRYQ5W0U4 402 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 PEX26Q7Z412 305 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 ZNF710Q8N1W2 664 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 SNX29Q8TEQ0 813 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 TSNARE1Q96NA8 513 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 AIFM3Q96NN9 605 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 NAP1L3Q99457 506 aaPredicted RBP9.66□□□□□ -0.86
RTN3-202ENST00000339997 MTUS1Q9ULD2 1270 aa9.66□□□□□ -0.86
RTN3-202ENST00000339997 SIGLEC1Q9BZZ2 1709 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 TUBBP07437 444 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 RPS6KA1Q15418 735 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 ZNF365Q70YC5 407 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 CCDC65Q8IXS2 484 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 ACRBPQ8NEB7 543 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 SDR42E1Q8WUS8 393 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 TCP11Q8WWU5 503 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 CAPS2Q9BXY5 557 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 POLD4Q9HCU8 107 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 GPHNQ9NQX3 736 aaPredicted RBP9.65□□□□□ -0.86
RTN3-202ENST00000339997 ST7Q9NRC1 585 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 TXNDC16Q9P2K2 825 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 IFT172Q9UG01 1749 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 GCP02774 474 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 GOLGA8HP0CJ92 632 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 GNA11P29992 359 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 RFC1P35251 1148 aaPredicted RBP9.65□□□□□ -0.86
RTN3-202ENST00000339997 EHHADHQ08426 723 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 SEL1L2Q5TEA6 688 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 BANK1Q8NDB2 785 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 OR8K1Q8NGG5 319 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 APPBP2Q92624 585 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 LRWD1Q9UFC0 647 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 CCDC169A6NNP5 214 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 RNMTO43148 476 aaKnown RBP9.65□□□□□ -0.86
RTN3-202ENST00000339997 ZWINTO95229 277 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 CFAP221Q4G0U5 840 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 ZNF790Q6PG37 636 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 ZNF589Q86UQ0 364 aaPredicted RBP9.65□□□□□ -0.86
RTN3-202ENST00000339997 JPH2Q9BR39 696 aaPredicted RBP9.65□□□□□ -0.86
RTN3-202ENST00000339997 STMN4Q9H169 189 aaPredicted RBP9.65□□□□□ -0.86
RTN3-202ENST00000339997 HELLSQ9NRZ9 838 aa9.65□□□□□ -0.86
RTN3-202ENST00000339997 TPX2Q9ULW0 747 aaKnown RBP9.65□□□□□ -0.86
RTN3-202ENST00000339997 CYP27A1Q02318 531 aa9.65□□□□□ -0.87
RTN3-202ENST00000339997 ZKSCAN8Q15776 578 aaPredicted RBP9.65□□□□□ -0.87
RTN3-202ENST00000339997 CFAP157Q5JU67 520 aa9.65□□□□□ -0.87
RTN3-202ENST00000339997 SDCCAG8Q86SQ7 713 aaPredicted RBP9.65□□□□□ -0.87
RTN3-202ENST00000339997 POTEDQ86YR6 584 aa9.65□□□□□ -0.87
RTN3-202ENST00000339997 MIPOL1Q8TD10 442 aa9.65□□□□□ -0.87
RTN3-202ENST00000339997 ZNF496Q96IT1 587 aaPredicted RBP9.65□□□□□ -0.87
RTN3-202ENST00000339997 SETDB2Q96T68 719 aa9.65□□□□□ -0.87
RTN3-202ENST00000339997 EFCAB8A8MWE9 144 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 ALDH3A1P30838 453 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 SLC7A5Q01650 507 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 ASIC2Q16515 512 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 SIRT2Q8IXJ6 389 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 PARD6BQ9BYG5 372 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 SLC39A2Q9NP94 309 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.64□□□□□ -0.87
RTN3-202ENST00000339997 BACH1O14867 736 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 USH1GQ495M9 461 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 NCAPH2Q6IBW4 605 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 VPS52Q8N1B4 723 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 GPKOWQ92917 476 aaPredicted RBP eCLIP9.64□□□□□ -0.873e-6■□□□□ 9.4
RTN3-202ENST00000339997 SSX2IPQ9Y2D8 614 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 CD2APQ9Y5K6 639 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 SOWAHDA6NJG2 315 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 KCNJ18B7U540 433 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 CETN3O15182 167 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 HOXC9P31274 260 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 KCNJ12Q14500 433 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 LLPHQ9BRT6 129 aaKnown RBP9.64□□□□□ -0.87
RTN3-202ENST00000339997 IMPG2Q9BZV3 1241 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 SAMSN1Q9NSI8 373 aaKnown RBP9.64□□□□□ -0.87
RTN3-202ENST00000339997 ACTN4O43707 911 aaKnown RBP9.64□□□□□ -0.87
RTN3-202ENST00000339997 PRPHP41219 470 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 PAK2Q13177 524 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 GCKRQ14397 625 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 GEN1Q17RS7 908 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 PI16Q6UXB8 463 aa9.64□□□□□ -0.87
RTN3-202ENST00000339997 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.64□□□□□ -0.87
RTN3-202ENST00000339997 U2AF1L4Q8WU68 220 aaKnown RBP9.64□□□□□ -0.87
RTN3-202ENST00000339997 BIN2Q9UBW5 565 aaPredicted RBP9.64□□□□□ -0.87
RTN3-202ENST00000339997 UTRNP46939 3433 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 NDC80O14777 642 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 FGAP02671 866 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 LRRC24Q50LG9 513 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 LRRC43Q8N309 656 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 MARCH10Q8NA82 808 aaPredicted RBP9.63□□□□□ -0.87
RTN3-202ENST00000339997 PROCA1Q8NCQ7 364 aaPredicted RBP9.63□□□□□ -0.87
RTN3-202ENST00000339997 RASGRP4Q8TDF6 673 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 AGTPBP1Q9UPW5 1226 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 USP27XA6NNY8 438 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 TBC1D8O95759 1140 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 BAG2O95816 211 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 PARP1P09874 1014 aaKnown RBP9.63□□□□□ -0.87
RTN3-202ENST00000339997 HSPD1P10809 573 aaKnown RBP9.63□□□□□ -0.87
RTN3-202ENST00000339997 TECP42680 631 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 SLCO1A2P46721 670 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 MAP7D1Q3KQU3 841 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 ATL3Q6DD88 541 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms