RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 PHACTR2O75167 634 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 C8orf34Q49A92 452 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 EPHA10Q5JZY3 1008 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 TMEM179Q6ZVK1 233 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 ROBO1Q9Y6N7 1651 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 REXO1Q8N1G1 1221 aaKnown RBP11.5□□□□□ -0.57
USP54-201ENST00000339859 CD2APQ9Y5K6 639 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 GLIPR1L2Q4G1C9 344 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 PSTPIP2Q9H939 334 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 RSBN1LQ6PCB5 846 aaPredicted RBP11.5□□□□□ -0.57
USP54-201ENST00000339859 OSBPL3Q9H4L5 887 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 ZMYM6O95789 1325 aa11.5□□□□□ -0.57
USP54-201ENST00000339859 SMCO2A6NFE2 343 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 MCAMP43121 646 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 MMP14P50281 582 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 MKRN3Q13064 507 aaKnown RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 ZNF174Q15697 407 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 SH3RF3Q8TEJ3 882 aaPredicted RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 SEC62Q99442 399 aaKnown RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 KCNG1Q9UIX4 513 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 SV2BQ7L1I2 683 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 MYL10Q9BUA6 226 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 CNOT7Q9UIV1 285 aaKnown RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 KLRF2D3W0D1 207 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 hCG_1984214I3L0E3 225 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 BMP3P12645 472 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 HOXD10P28358 340 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 STAT2P52630 851 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 NCAPH2Q6IBW4 605 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 CCDC65Q8IXS2 484 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 ZNF713Q8N859 430 aaPredicted RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 ZNF274Q96GC6 653 aaPredicted RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 TDRD3Q9H7E2 651 aaKnown RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 KDM6AO15550 1401 aaPredicted RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 PRKCSHP14314 528 aaPredicted RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 GIMAP6Q6P9H5 292 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 USP17L2Q6R6M4 530 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 IMPG2Q9BZV3 1241 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 USP17L5A8MUK1 530 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 MARCKSP29966 332 aaPredicted RBP11.49□□□□□ -0.57
USP54-201ENST00000339859 CETN2P41208 172 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 AFMP43652 599 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 OTUD6AQ7L8S5 288 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 EXOC7Q9UPT5 735 aa11.49□□□□□ -0.57
USP54-201ENST00000339859 CCDC172P0C7W6 258 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 CALCRLQ16602 461 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 TRIM47Q96LD4 638 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 WRNIP1Q96S55 665 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 AP5M1Q9H0R1 490 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 ANTXR1Q9H6X2 564 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 RABGAP1Q9Y3P9 1069 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 DDX39AO00148 427 aaKnown RBP11.48□□□□□ -0.57
USP54-201ENST00000339859 STRN3Q13033 797 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 TTC38Q5R3I4 469 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 DHX58Q96C10 678 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 AMNQ9BXJ7 453 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 TESPA1A2RU30 521 aaPredicted RBP11.48□□□□□ -0.57
USP54-201ENST00000339859 ARHGEF35A5YM69 484 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 SYDE2Q5VT97 1194 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 FOSP01100 380 aaPredicted RBP11.48□□□□□ -0.57
USP54-201ENST00000339859 CDK8P49336 464 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 HS2ST1Q7LGA3 356 aa11.48□□□□□ -0.57
USP54-201ENST00000339859 FAM160B1Q5W0V3 765 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 DCAF4Q8WV16 495 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 CPA1P15085 419 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 RABL6Q3YEC7 729 aaPredicted RBP11.47□□□□□ -0.57
USP54-201ENST00000339859 SLFN12Q8IYM2 578 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 FANCBQ8NB91 859 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 XRN1Q8IZH2 1706 aaKnown RBP11.47□□□□□ -0.57
USP54-201ENST00000339859 BICDL2A1A5D9 508 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 GSPT1P15170 499 aaKnown RBP11.47□□□□□ -0.57
USP54-201ENST00000339859 CCND2P30279 289 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 HACE1Q8IYU2 909 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 PSMA7O14818 248 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 CSF1RP07333 972 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 SPA17Q15506 151 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 DHX37Q8IY37 1157 aaKnown RBP11.47□□□□□ -0.57
USP54-201ENST00000339859 IQUBQ8NA54 791 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 FAM84BQ96KN1 310 aaPredicted RBP11.47□□□□□ -0.57
USP54-201ENST00000339859 NBPF3Q9H094 633 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 LPXNO60711 386 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 FMNL1O95466 1100 aaPredicted RBP11.47□□□□□ -0.57
USP54-201ENST00000339859 SSR1P43307 286 aaKnown RBP11.47□□□□□ -0.57
USP54-201ENST00000339859 MIER3Q7Z3K6 550 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 MNS1Q8NEH6 495 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 CNPY2Q9Y2B0 182 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 RFX7Q2KHR2 1363 aa11.47□□□□□ -0.57
USP54-201ENST00000339859 PPP1R2P41236 205 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 PI16Q6UXB8 463 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 FASTKD5Q7L8L6 764 aaKnown RBP11.46□□□□□ -0.57
USP54-201ENST00000339859 TBC1D5Q92609 795 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 KIAA1328Q86T90 577 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 DIS3L2Q8IYB7 885 aaKnown RBP11.46□□□□□ -0.57
USP54-201ENST00000339859 AGBL3Q8NEM8 1001 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 HOXC10Q9NYD6 342 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 GAS7O60861 476 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 PTH1RQ03431 593 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 GPS2Q13227 327 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 SPICE1Q8N0Z3 855 aa11.46□□□□□ -0.57
USP54-201ENST00000339859 GLG1Q92896 1179 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms