RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ATXN2Q99700 1313 aaKnown RBP6.4□□□□□ -1.38
CSDE1-202ENST00000339438 VPS37CA5D8V6 355 aaPredicted RBP6.4□□□□□ -1.39
CSDE1-202ENST00000339438 ERLIN2O94905 339 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 PTPN12Q05209 780 aaKnown RBP6.4□□□□□ -1.39
CSDE1-202ENST00000339438 TLDC1Q6P9B6 456 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 POTEEQ6S8J3 1075 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 FCHSD1Q86WN1 690 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 MICALL1Q8N3F8 863 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 ZNF784Q8NCA9 323 aaPredicted RBP6.4□□□□□ -1.39
CSDE1-202ENST00000339438 FAM71BQ8TC56 605 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 SH2B1Q9NRF2 756 aaPredicted RBP6.4□□□□□ -1.39
CSDE1-202ENST00000339438 SNRKQ9NRH2 765 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 A0A0G2JLW4 131 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 MYL6BP14649 208 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 PAX7P23759 505 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 KLRK1P26718 216 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 PREPLQ4J6C6 727 aaPredicted RBP6.4□□□□□ -1.39
CSDE1-202ENST00000339438 ZC3H12AQ5D1E8 599 aaKnown RBP6.4□□□□□ -1.39
CSDE1-202ENST00000339438 TXNRD3Q86VQ6 643 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 ALDH8A1Q9H2A2 487 aaPredicted RBP6.4□□□□□ -1.39
CSDE1-202ENST00000339438 FAM204AQ9H8W3 233 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 INTS13Q9NVM9 706 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 FAM205AQ6ZU69 1335 aa6.4□□□□□ -1.39
CSDE1-202ENST00000339438 CUTAO60888 179 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 HSP90B1P14625 803 aaKnown RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 HMGB2P26583 209 aaKnown RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 ELF1P32519 619 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 NOVP48745 357 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 TBX2Q13207 712 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 CASP8Q14790 479 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 JAKMIP3Q5VZ66 844 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 LARP1BQ659C4 914 aaKnown RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 HDXQ7Z353 690 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 DNAAF4Q8WXU2 420 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 DPF2Q92785 391 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 UTP14AQ9BVJ6 771 aaKnown RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 CFHR5Q9BXR6 569 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 AGPSO00116 658 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 NBPF7P0C2Y1 421 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 LIG3P49916 1009 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 CAP1Q01518 475 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 FLIIQ13045 1269 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 TOB2Q14106 344 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 PARP10Q53GL7 1025 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 ZNF483Q8TF39 744 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 CELF1Q92879 486 aaKnown RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 ERCC4Q92889 916 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 RILPL2Q969X0 211 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 STK31Q9BXU1 1019 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 LRRCC1Q9C099 1032 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 IFNKQ9P0W0 207 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 ARID2Q68CP9 1835 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 SMCHD1A6NHR9 2005 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 GOLGA6L19H0YKK7 550 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 VIL1P09327 827 aaKnown RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 VSNL1P62760 191 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 DPCR1Q3MIW9 517 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 HDGFL1Q5TGJ6 251 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 NAIF1Q69YI7 327 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 TMC6Q7Z403 805 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 FAM228AQ86W67 206 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 ERC1Q8IUD2 1116 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 MASTLQ96GX5 879 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 ZSCAN31Q96LW9 406 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 JPH2Q9BR39 696 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 BSDC1Q9NW68 430 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 RCOR1Q9UKL0 485 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 ATF5Q9Y2D1 282 aaPredicted RBP6.39□□□□□ -1.39
CSDE1-202ENST00000339438 PPP2R2CQ9Y2T4 447 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 FAM169AQ9Y6X4 670 aa6.39□□□□□ -1.39
CSDE1-202ENST00000339438 TFRCP02786 760 aaKnown RBP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 FKBP4Q02790 459 aaKnown RBP eCLIP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 MCM6Q14566 821 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 PRPF40BQ6NWY9 871 aaKnown RBP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 CERS5Q8N5B7 392 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 GOLGA1Q92805 767 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 TAF6LQ9Y6J9 622 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 GBF1Q92538 1859 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 A0A0U1RQJ8 604 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 FSBPO95073 299 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 NPR1P16066 1061 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 SFPQP23246 707 aaKnown RBP eCLIP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 GOLGA8FQ08AF8 430 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 GOLGA8DPQ0D2H9 430 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 FMR1NBQ8N0W7 255 aaPredicted RBP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 ATRIPQ8WXE1 791 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 TEPSINQ96N21 525 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 FTOQ9C0B1 505 aaKnown RBP eCLIP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 EHD4Q9H223 541 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 CD248Q9HCU0 757 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 EME2A4GXA9 379 aaPredicted RBP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 CTAGE5O15320 804 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 GCFC2P16383 781 aaKnown RBP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 CCNHP51946 323 aaPredicted RBP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 BIRC2Q13490 618 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 ZRSR1Q15695 479 aaKnown RBP6.38□□□□□ -1.39
CSDE1-202ENST00000339438 TOGARAM2Q6ZUX3 1019 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 SRGAP1Q7Z6B7 1085 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 FBXO33Q7Z6M2 555 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 AMOTL1Q8IY63 956 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms