RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ARHGEF6Q15052 776 aa7.77□□□□□ -1.17
SF3B1-201ENST00000335508 LCORLQ8N3X6 602 aa7.77□□□□□ -1.17
SF3B1-201ENST00000335508 LARSQ9P2J5 1176 aaKnown RBP7.77□□□□□ -1.17
SF3B1-201ENST00000335508 LAD1O00515 517 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 C21orf2O43822 256 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 MTIF2P46199 727 aaKnown RBP7.76□□□□□ -1.17
SF3B1-201ENST00000335508 CCDC40Q4G0X9 1142 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 BLIDQ8IZY5 108 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 LINC00116Q8NCU8 138 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 NOC3LQ8WTT2 800 aaKnown RBP7.76□□□□□ -1.17
SF3B1-201ENST00000335508 STAG1Q8WVM7 1258 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 TRIM47Q96LD4 638 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 FOXP1Q9H334 677 aaPredicted RBP7.76□□□□□ -1.17
SF3B1-201ENST00000335508 GINM1Q9NU53 330 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 GRIN3BO60391 1043 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 SCNN1DP51172 638 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 ADCK5Q3MIX3 580 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 HS1BP3Q53T59 392 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 CCDC174Q6PII3 467 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 MAGEF1Q9HAY2 307 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 SAP30BPQ9UHR5 308 aaKnown RBP7.76□□□□□ -1.17
SF3B1-201ENST00000335508 TPCN1Q9ULQ1 816 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 MARCKSP29966 332 aaPredicted RBP7.76□□□□□ -1.17
SF3B1-201ENST00000335508 CCDC112Q8NEF3 446 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.76□□□□□ -1.17
SF3B1-201ENST00000335508 GOPCQ9HD26 462 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 CACNA2D4Q7Z3S7 1137 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 PRM3Q9NNZ6 103 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 FBXO40Q9UH90 709 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 RCOR1Q9UKL0 485 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 CNPY2Q9Y2B0 182 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 ATF5Q9Y2D1 282 aaPredicted RBP7.76□□□□□ -1.17
SF3B1-201ENST00000335508 MROH7-TTC4A0A0A0MT08 1334 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 PPFIA3O75145 1194 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 RXRAP19793 462 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 CTDSPL2Q05D32 466 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 TRIML1Q8N9V2 468 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 SMCR8Q8TEV9 937 aaPredicted RBP7.76□□□□□ -1.17
SF3B1-201ENST00000335508 GPCPD1Q9NPB8 672 aa7.76□□□□□ -1.17
SF3B1-201ENST00000335508 SNAP23O00161 211 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 RAD17O75943 681 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 BMP3P12645 472 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 CMA1P23946 247 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 MYL5Q02045 173 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 SLC39A14Q15043 492 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 FBXO11Q86XK2 927 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 CCDC65Q8IXS2 484 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 SCLT1Q96NL6 688 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 POLR3EQ9NVU0 708 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 ZSWIM5Q9P217 1185 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 CASP7P55210 303 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 ORC2Q13416 577 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-201ENST00000335508 CAMK4Q16566 473 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 NEK8Q86SG6 692 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 FCHSD1Q86WN1 690 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 NSUN7Q8NE18 718 aaKnown RBP7.75□□□□□ -1.17
SF3B1-201ENST00000335508 AGBL3Q8NEM8 1001 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 NSUN4Q96CB9 384 aaKnown RBP7.75□□□□□ -1.17
SF3B1-201ENST00000335508 CUEDC2Q9H467 287 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 SMCO2A6NFE2 343 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 BTBD18B2RXH4 712 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 BACH1O14867 736 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 SRGNP10124 158 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 CCDC84Q86UT8 332 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-201ENST00000335508 CPXCR1Q8N123 301 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 FAM163AQ96GL9 167 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-201ENST00000335508 ACBD3Q9H3P7 528 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 NLRX1Q86UT6 975 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 RP1L1Q8IWN7 2480 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-201ENST00000335508 NAP1L1P55209 391 aaKnown RBP7.75□□□□□ -1.17
SF3B1-201ENST00000335508 TCERG1LQ5VWI1 586 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 MTERF4Q7Z6M4 381 aaKnown RBP7.75□□□□□ -1.17
SF3B1-201ENST00000335508 AK8Q96MA6 479 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 VPS33BQ9H267 617 aa7.75□□□□□ -1.17
SF3B1-201ENST00000335508 PRPF3O43395 683 aaKnown RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 ONECUT3O60422 494 aaPredicted RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 JAK2O60674 1132 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 SLC4A8Q2Y0W8 1093 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 SV2BQ7L1I2 683 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 CNPY4Q8N129 248 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 MYO6Q9UM54 1294 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 SH2B2O14492 632 aaPredicted RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 ZBTB7AO95365 584 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 MYL1P05976 194 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 TYRO3Q06418 890 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 NCBP1Q09161 790 aaKnown RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 PHKBQ93100 1093 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 PSTPIP2Q9H939 334 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 GSG1L2A8MUP6 293 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 BIN1O00499 593 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 AKR1B10O60218 316 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 CFBP00751 764 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 FAM47AQ5JRC9 791 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 APBB1IPQ7Z5R6 666 aaPredicted RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 CCAR2Q8N163 923 aaKnown RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 IQCDQ96DY2 449 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 UBA5Q9GZZ9 404 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 ADD3Q9UEY8 706 aaKnown RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 FAM205AQ6ZU69 1335 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 GPR75-ASB3A0A0A6YYF3 556 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms