RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 TNNI2P48788 182 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 ZNF157P51786 506 aaPredicted RBP2.16□□□□□ -2.06
LINC00643-201ENST00000334389 MAP3K9P80192 1104 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 ZP2Q05996 745 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 ST3GAL2Q16842 350 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 TKFCQ3LXA3 575 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 SLC9C1Q4G0N8 1177 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 SCUBE3Q8IX30 993 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 FBXL6Q8N531 539 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 OXER1Q8TDS5 423 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 ZDHHC15Q96MV8 337 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 KRTAP4-5Q9BYR2 181 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 KIAA1522Q9P206 1035 aaPredicted RBP2.16□□□□□ -2.06
LINC00643-201ENST00000334389 PLXNA4Q9HCM2 1894 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 YDJCA8MPS7 323 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 EVI5O60447 810 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 AVPP01185 164 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 ZEB1P37275 1124 aaPredicted RBP2.16□□□□□ -2.06
LINC00643-201ENST00000334389 PTPN21Q16825 1174 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 TBC1D9BQ66K14 1250 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 SULF1Q8IWU6 871 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 SLC34A3Q8N130 599 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 MSLNLQ96KJ4 702 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 GAS2L1Q99501 681 aaPredicted RBP2.16□□□□□ -2.06
LINC00643-201ENST00000334389 PDLIM7Q9NR12 457 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 CNOT7Q9UIV1 285 aaKnown RBP2.16□□□□□ -2.06
LINC00643-201ENST00000334389 RIPOR2Q9Y4F9 1068 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 PCDHGB2Q9Y5G2 931 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 PTCH2Q9Y6C5 1203 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 MTCH2Q9Y6C9 303 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 GJA3Q9Y6H8 435 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 BAZ2AQ9UIF9 1905 aaKnown RBP2.16□□□□□ -2.06
LINC00643-201ENST00000334389 IL16Q14005 1332 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 SCN5AQ14524 2016 aa2.16□□□□□ -2.06
LINC00643-201ENST00000334389 USP17L3A6NCW0 530 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 USP17L4A6NCW7 530 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 IGF2BP3O00425 579 aaKnown RBP eCLIP2.15□□□□□ -2.06
LINC00643-201ENST00000334389 NKRFO15226 690 aaKnown RBP eCLIP2.15□□□□□ -2.06
LINC00643-201ENST00000334389 GOSR1O95249 250 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 FMNL1O95466 1100 aaPredicted RBP2.15□□□□□ -2.06
LINC00643-201ENST00000334389 SNRPA1P09661 255 aaKnown RBP2.15□□□□□ -2.06
LINC00643-201ENST00000334389 OSBPP22059 807 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 DCAF6Q58WW2 860 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 USP17L1Q7RTZ2 530 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 KRTAP19-1Q8IUB9 90 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 APBB2Q92870 758 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 WNT2BQ93097 391 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 BCAS3Q9H6U6 928 aa2.15□□□□□ -2.06
LINC00643-201ENST00000334389 RC3H2Q9HBD1 1191 aaKnown RBP2.15□□□□□ -2.06
LINC00643-201ENST00000334389 EVLQ9UI08 416 aaPredicted RBP2.15□□□□□ -2.06
LINC00643-201ENST00000334389 MUC5BQ9HC84 5762 aaPredicted RBP2.15□□□□□ -2.06
LINC00643-201ENST00000334389 GOLGA8CPA6NN73 597 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 C10orf142B7Z368 130 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 ADAM23O75077 832 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 FAM155BO75949 473 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 AVPR2P30518 371 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 CRHR2Q13324 411 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 GSE1Q14687 1217 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 ZC3H14Q6PJT7 736 aaKnown RBP2.15□□□□□ -2.07
LINC00643-201ENST00000334389 RPUSD2Q8IZ73 545 aaKnown RBP2.15□□□□□ -2.07
LINC00643-201ENST00000334389 MAML2Q8IZL2 1156 aaPredicted RBP2.15□□□□□ -2.07
LINC00643-201ENST00000334389 PLCD3Q8N3E9 789 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 CCDC155Q8N6L0 562 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 ZKSCAN4Q969J2 545 aaPredicted RBP2.15□□□□□ -2.07
LINC00643-201ENST00000334389 DZANK1Q9NVP4 752 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 PCCAP05165 728 aaPredicted RBP2.15□□□□□ -2.07
LINC00643-201ENST00000334389 CSF1RP07333 972 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 SOX10P56693 466 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 GIT2Q14161 759 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 OCLNQ16625 522 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 USPL1Q5W0Q7 1092 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 SLC39A5Q6ZMH5 540 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 RGS22Q8NE09 1264 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 PBXIP1Q96AQ6 731 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 GRAMD1AQ96CP6 724 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 FBXL18Q96ME1 805 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 EYA1Q99502 592 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 SIL1Q9H173 461 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 SENP2Q9HC62 589 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 LHX6Q9UPM6 363 aa2.15□□□□□ -2.07
LINC00643-201ENST00000334389 LAS1LQ9Y4W2 734 aaKnown RBP2.15□□□□□ -2.07
LINC00643-201ENST00000334389 GLRX3O76003 335 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 ZNF883P0CG24 379 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 CHMLP26374 656 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 RGS2P41220 211 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 GJA9P57773 515 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 TRIM67Q6ZTA4 783 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 BRI3BPQ8WY22 251 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 CLDN23Q96B33 292 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 FAM89AQ96GI7 184 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 UTP14AQ9BVJ6 771 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 AFG3L2Q9Y4W6 797 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 CTNND1O60716 968 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 FOSL2P15408 326 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 EN2P19622 333 aaPredicted RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 GJA5P36382 358 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 STAT3P40763 770 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 ID4P47928 161 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 CD97P48960 835 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 LAMB3Q13751 1172 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms