RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HAUS4Q9H6D7 363 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 SNRPA1P09661 255 aaKnown RBP15.72■□□□□ 0.11
COL7A1-201ENST00000328333 PDE6BP35913 854 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 PLCB4Q15147 1175 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 A0A1B0GVL5 298 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 ALS2CLQ60I27 953 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 LRGUKQ96M69 825 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 ANGEL1Q9UNK9 670 aaKnown RBP15.72■□□□□ 0.11
COL7A1-201ENST00000328333 CTAGE3PQ8IX95 158 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 RNF113AO15541 343 aaKnown RBP15.72■□□□□ 0.11
COL7A1-201ENST00000328333 ATP2B3Q16720 1220 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 CCDC92Q53HC0 331 aaPredicted RBP15.72■□□□□ 0.11
COL7A1-201ENST00000328333 DCUN1D2Q6PH85 259 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 ANKLE2Q86XL3 938 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 EPHB4P54760 987 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 PSPC1Q8WXF1 523 aaKnown RBP15.72■□□□□ 0.11
COL7A1-201ENST00000328333 SYCP2Q9BX26 1530 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 APOEP02649 317 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 SESN3P58005 492 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 MMS22LQ6ZRQ5 1243 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 NT5C3AQ9H0P0 336 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 IPO11Q9UI26 975 aaKnown RBP15.71■□□□□ 0.11
COL7A1-201ENST00000328333 MYH11P35749 1972 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 IGHDP01880 384 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 PSMD7P51665 324 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 TMTC3Q6ZXV5 915 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 CCDC13Q8IYE1 715 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 ANGPTL3Q9Y5C1 460 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 MAP3K7O43318 606 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 EIF3BP55884 814 aaKnown RBP15.71■□□□□ 0.11
COL7A1-201ENST00000328333 ASPHQ12797 758 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 TPCN1Q9ULQ1 816 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 SLC4A4Q9Y6R1 1079 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 KRT9P35527 623 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 DACT3Q96B18 629 aaPredicted RBP15.71■□□□□ 0.11
COL7A1-201ENST00000328333 SPDL1Q96EA4 605 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 SERPINI1Q99574 410 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 UHRF1BP1Q6BDS2 1440 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 LRRC8CQ8TDW0 803 aa15.71■□□□□ 0.11
COL7A1-201ENST00000328333 CFAP61Q8NHU2 1237 aa15.71■□□□□ 0.1
COL7A1-201ENST00000328333 VGLL3A8MV65 326 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 TTI1O43156 1089 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 FNBP4Q8N3X1 1017 aaPredicted RBP15.7■□□□□ 0.1
COL7A1-201ENST00000328333 RSAD2Q8WXG1 361 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 TSC22D3Q99576 134 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 BAZ2BQ9UIF8 2168 aaKnown RBP15.7■□□□□ 0.1
COL7A1-201ENST00000328333 ZNF449Q6P9G9 518 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 PRG4Q92954 1404 aaPredicted RBP15.7■□□□□ 0.1
COL7A1-201ENST00000328333 E9PMD0 336 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 RPS6KB1P23443 525 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 ATP8B2P98198 1209 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 CBX8Q9HC52 389 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 NFE2L3Q9Y4A8 694 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 F6X3S4 739 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 KRIT1O00522 736 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 KCNA4P22459 653 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 ARHGEF18Q6ZSZ5 1173 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 POLE3Q9NRF9 147 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 GFAPP14136 432 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 RAD51AP2Q09MP3 1159 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 PAWRQ96IZ0 340 aaKnown RBP15.7■□□□□ 0.1
COL7A1-201ENST00000328333 MRC2Q9UBG0 1479 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 PPIP5K1Q6PFW1 1433 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 PDZD4Q76G19 769 aaPredicted RBP15.7■□□□□ 0.1
COL7A1-201ENST00000328333 N4BP2L2Q92802 583 aaPredicted RBP15.7■□□□□ 0.1
COL7A1-201ENST00000328333 MSH6P52701 1360 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 SOS2Q07890 1332 aaPredicted RBP15.7■□□□□ 0.1
COL7A1-201ENST00000328333 SLC17A8Q8NDX2 589 aa15.7■□□□□ 0.1
COL7A1-201ENST00000328333 CCDC85AQ96PX6 553 aaPredicted RBP15.7■□□□□ 0.1
COL7A1-201ENST00000328333 PI4KAP2A4QPH2 592 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 PARP1P09874 1014 aaKnown RBP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 BIRC3Q13489 604 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 C10orf76Q5T2E6 689 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 PI4KAP1Q8N8J0 262 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 POLR2DO15514 142 aaKnown RBP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 LIG3P49916 1009 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 KLHL30Q0D2K2 578 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 CASC4Q6P4E1 433 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 EIF3DO15371 548 aaKnown RBP eCLIP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 XRCC5P13010 732 aaKnown RBP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 BRD2P25440 801 aaKnown RBP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 ANKRD13DQ6ZTN6 518 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 OR8K1Q8NGG5 319 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 NOC2LQ9Y3T9 749 aaKnown RBP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 FAM135BQ49AJ0 1406 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 PRPF6O94906 941 aaKnown RBP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 ST5P78524 1137 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 USP6NLQ92738 828 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 SPC25Q9HBM1 224 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 FAM8A1Q9UBU6 413 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 ETF1P62495 437 aaKnown RBP15.69■□□□□ 0.1
COL7A1-201ENST00000328333 VAT1LQ9HCJ6 419 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 IGSF3O75054 1194 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 TRIM15Q9C019 465 aa15.69■□□□□ 0.1
COL7A1-201ENST00000328333 DNM2P50570 870 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 OLFM3Q96PB7 478 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 A0A1B0GW55 424 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 SYF2O95926 243 aaKnown RBP15.68■□□□□ 0.1
COL7A1-201ENST00000328333 DUX4L2P0CJ85 424 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms