RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 SHC4Q6S5L8 630 aa14.34□□□□□ -0.11
RETREG3-201ENST00000309428 NLRP3Q96P20 1036 aa14.34□□□□□ -0.11
RETREG3-201ENST00000309428 ZEB2O60315 1214 aa14.33□□□□□ -0.11
RETREG3-201ENST00000309428 NLRP12P59046 1061 aa14.33□□□□□ -0.11
RETREG3-201ENST00000309428 TTC31Q49AM3 519 aaPredicted RBP14.33□□□□□ -0.11
RETREG3-201ENST00000309428 E4F1Q66K89 784 aaPredicted RBP14.33□□□□□ -0.11
RETREG3-201ENST00000309428 DHX40Q8IX18 779 aaKnown RBP14.33□□□□□ -0.11
RETREG3-201ENST00000309428 KRI1Q8N9T8 703 aaKnown RBP14.33□□□□□ -0.11
RETREG3-201ENST00000309428 RTEL1Q9NZ71 1219 aa14.33□□□□□ -0.11
RETREG3-201ENST00000309428 LMTK3Q96Q04 1460 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 PALLDQ8WX93 1383 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 IQCB1Q15051 598 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 TSGA10IPQ3SY00 556 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 MARCH10Q8NA82 808 aaPredicted RBP14.33□□□□□ -0.12
RETREG3-201ENST00000309428 FANCBQ8NB91 859 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 LY9Q9HBG7 655 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 SAMSN1Q9NSI8 373 aaKnown RBP14.33□□□□□ -0.12
RETREG3-201ENST00000309428 ZNF652Q9Y2D9 606 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 CTAGE9A4FU28 777 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 IGSF22Q8N9C0 903 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 PARD6BQ9BYG5 372 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 ZNHIT6Q9NWK9 470 aaKnown RBP14.33□□□□□ -0.12
RETREG3-201ENST00000309428 MAGEC2Q9UBF1 373 aaPredicted RBP14.33□□□□□ -0.12
RETREG3-201ENST00000309428 ZMYM6O95789 1325 aa14.33□□□□□ -0.12
RETREG3-201ENST00000309428 VEGFAP15692 232 aaPredicted RBP14.32□□□□□ -0.12
RETREG3-201ENST00000309428 ARMCX5Q6P1M9 558 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 CCDC148Q8NFR7 591 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.32□□□□□ -0.12
RETREG3-201ENST00000309428 KRT23Q9C075 422 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 CSRNP2Q9H175 543 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 TOPAZ1Q8N9V7 1692 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 MPHOSPH10O00566 681 aaKnown RBP14.32□□□□□ -0.12
RETREG3-201ENST00000309428 MRPS25P82663 173 aaKnown RBP14.32□□□□□ -0.12
RETREG3-201ENST00000309428 CCZ1BP86790 482 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 CCZ1P86791 482 aaPredicted RBP14.32□□□□□ -0.12
RETREG3-201ENST00000309428 BRAPQ7Z569 592 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 NOSTRINQ8IVI9 506 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 RGS22Q8NE09 1264 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 SLF1Q9BQI6 1058 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 BRMS1Q9HCU9 246 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 GPR108Q9NPR9 543 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 CAMTA1Q9Y6Y1 1673 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 RFC4P35249 363 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 TXNRD3Q86VQ6 643 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 TGFBRAP1Q8WUH2 860 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 TANGO6Q9C0B7 1094 aa14.32□□□□□ -0.12
RETREG3-201ENST00000309428 TMEM51Q9NW97 253 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 FAN1Q9Y2M0 1017 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 USP17L3A6NCW0 530 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 USP17L4A6NCW7 530 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 TRIM75PA6NK02 468 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 UBAP1LF5GYI3 381 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 ARHGAP6O43182 974 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 RBM5P52756 815 aaKnown RBP eCLIP14.31□□□□□ -0.12
RETREG3-201ENST00000309428 LONRF2Q1L5Z9 754 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 TBC1D9BQ66K14 1250 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 USP17L1Q7RTZ2 530 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 GBP3Q9H0R5 595 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 BCCIPQ9P287 314 aaKnown RBP eCLIP14.31□□□□□ -0.12
RETREG3-201ENST00000309428 IKQ13123 557 aaPredicted RBP14.31□□□□□ -0.12
RETREG3-201ENST00000309428 SLC39A14Q15043 492 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 RRAGBQ5VZM2 374 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 IMPACTQ9P2X3 320 aa14.31□□□□□ -0.12
RETREG3-201ENST00000309428 CSF1RP07333 972 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 PDE4BQ07343 736 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 UBE3CQ15386 1083 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 ODF2Q5BJF6 829 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 CLEC10AQ8IUN9 316 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 GOLGA6L9A6NEM1 432 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 ENC1O14682 589 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 SLURP2P0DP57 97 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 IL6STP40189 918 aaPredicted RBP14.3□□□□□ -0.12
RETREG3-201ENST00000309428 MYO1CO00159 1063 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 TFAP4Q01664 338 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 HDXQ7Z353 690 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 RNF41Q9H4P4 317 aaPredicted RBP14.3□□□□□ -0.12
RETREG3-201ENST00000309428 CCNL1Q9UK58 526 aaPredicted RBP14.3□□□□□ -0.12
RETREG3-201ENST00000309428 TACC3Q9Y6A5 838 aa14.3□□□□□ -0.12
RETREG3-201ENST00000309428 AKR1B15C9JRZ8 316 aaPredicted RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 RNASE9P60153 205 aaKnown RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 ZSCAN29Q8IWY8 852 aaPredicted RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 IGDCC4Q8TDY8 1250 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 TMEM87BQ96K49 555 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 WDR24Q96S15 920 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 MROH5Q6ZUA9 1318 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 SHTN1A0MZ66 631 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 MACROD2A1Z1Q3 448 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 PP2D1A8MPX8 630 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 HIBADHP31937 336 aaKnown RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 RPS8P62241 208 aaKnown RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 EARS2Q5JPH6 523 aaKnown RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 ZNF444Q8N0Y2 327 aaPredicted RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 UBA5Q9GZZ9 404 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 KAT14Q9H8E8 782 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 ADAM21Q9UKJ8 722 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 RRP15Q9Y3B9 282 aaKnown RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 OVOS2A0A0G2JMS6 1433 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 CPDO75976 1380 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 CCDC196A0A1B0GTZ2 297 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 YEATS4O95619 227 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms