RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ARHGEF2Q92974 986 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 PALMDQ9NP74 551 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 SAMD15Q9P1V8 674 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 OPHN1O60890 802 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 SYF2O95926 243 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 KCNA6P17658 529 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 NOP2P46087 812 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 SF3A3Q12874 501 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS35-201ENST00000299138 IFI16Q16666 785 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 ERCC6LQ2NKX8 1250 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 SWT1Q5T5J6 900 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 SPATA1Q5VX52 437 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 EMBQ6PCB8 327 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 SUGP1Q8IWZ8 645 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 FAM76AQ8TAV0 307 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 USP28Q96RU2 1077 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 KCNK9Q9NPC2 374 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 NDC80O14777 642 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 NR1I2O75469 434 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 CCDC129Q6ZRS4 1044 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 NUDCD3Q8IVD9 361 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS35-201ENST00000299138 PABPN1LA6NDY0 278 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 ALX1Q15699 326 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 NCAPGQ9BPX3 1015 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 MRPL46Q9H2W6 279 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 MAP3K2Q9Y2U5 619 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 GOLGA8BA8MQT2 603 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 MYO1CO00159 1063 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 IFIT1P09914 478 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 INPP1P49441 399 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 PLCD1P51178 756 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 MRPS9P82933 396 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 PLCB4Q15147 1175 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 GKAP1Q5VSY0 366 aaPredicted RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 ALS2CLQ60I27 953 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 INTS8Q75QN2 995 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 CCDC110Q8TBZ0 833 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 STAG1Q8WVM7 1258 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 PAG1Q9NWQ8 432 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 KCNH3Q9ULD8 1083 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 ZNF213O14771 459 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 SH3BP5O60239 455 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 LRMPQ12912 555 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 NECAB1Q8N987 351 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 ZNF512BQ96KM6 892 aaPredicted RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 CALR3Q96L12 384 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 FOXP1Q9H334 677 aaPredicted RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 ANGEL1Q9UNK9 670 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 ABCC6O95255 1503 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 TCP1P17987 556 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 EEF1GP26641 437 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 TOB2Q14106 344 aaPredicted RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 GCKRQ14397 625 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 UBE3BQ7Z3V4 1068 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 APLFQ8IW19 511 aaPredicted RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 NCKAP5LQ9HCH0 1330 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 MAFGO15525 162 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 WBP4O75554 376 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 WDHD1O75717 1129 aaPredicted RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 ANXA13P27216 316 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 VAV2P52735 878 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 EXOSC10Q01780 885 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 TTC39AQ5SRH9 613 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 DDX12PQ92771 950 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 SYTL4Q96C24 671 aaPredicted RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 UBXN6Q9BZV1 441 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 DAAM1Q9Y4D1 1078 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 EYA2O00167 538 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 PTH1RQ03431 593 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 SSRP1Q08945 709 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 UBE3CQ15386 1083 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 ZNF280CQ8ND82 737 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 NLRP2Q9NX02 1062 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 ZRANB1Q9UGI0 708 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 RRP15Q9Y3B9 282 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 NUB1Q9Y5A7 615 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 DEXIO95424 95 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 GFAPP14136 432 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 CALML3P27482 149 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 FKBP15Q5T1M5 1219 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 ANKRD13DQ6ZTN6 518 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 RSRC2Q7L4I2 434 aaKnown RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 SRLQ86TD4 932 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 EAF2Q96CJ1 260 aaPredicted RBP7.13□□□□□ -1.27
VPS35-201ENST00000299138 CARD6Q9BX69 1037 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 BOLA2Q9H3K6 86 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 FHOD1Q9Y613 1164 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 TMEM94Q12767 1356 aa7.13□□□□□ -1.27
VPS35-201ENST00000299138 A0A1W2PQC6 194 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 RNMTO43148 476 aaKnown RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 METAP2P50579 478 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS35-201ENST00000299138 AMPD3Q01432 767 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 E4F1Q66K89 784 aaPredicted RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 PNMA8AQ86V59 439 aaPredicted RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 UNC5CLQ8IV45 518 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 PLBD2Q8NHP8 589 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.12□□□□□ -1.275e-7■■□□□ 13.8
VPS35-201ENST00000299138 PGBD1Q96JS3 809 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 TRIM7Q9C029 511 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms