RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 FAM200AQ8TCP9 573 aa19.45■□□□□ 0.7
CPSF4-201ENST00000292476 HPS5Q9UPZ3 1129 aa19.45■□□□□ 0.7
CPSF4-201ENST00000292476 NAV1Q8NEY1 1877 aa19.45■□□□□ 0.7
CPSF4-201ENST00000292476 NID2Q14112 1375 aa19.45■□□□□ 0.7
CPSF4-201ENST00000292476 PSMD14O00487 310 aa19.44■□□□□ 0.7
CPSF4-201ENST00000292476 CYP2D6P10635 497 aa19.44■□□□□ 0.7
CPSF4-201ENST00000292476 RBM5P52756 815 aaKnown RBP eCLIP19.44■□□□□ 0.73e-9■□□□□ 10.6
CPSF4-201ENST00000292476 TNIP1Q15025 636 aa19.44■□□□□ 0.7
CPSF4-201ENST00000292476 IFIT1BQ5T764 474 aaKnown RBP19.44■□□□□ 0.7
CPSF4-201ENST00000292476 CATIPQ7Z7H3 387 aa19.44■□□□□ 0.7
CPSF4-201ENST00000292476 OGFOD1Q8N543 542 aa19.44■□□□□ 0.7
CPSF4-201ENST00000292476 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.44■□□□□ 0.7
CPSF4-201ENST00000292476 GOLGA8AA7E2F4 631 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 HLA-DOAP06340 250 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 POTEIP0CG38 1075 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 POTEJP0CG39 1038 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 LIG1P18858 919 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 LMOD1P29536 600 aaPredicted RBP19.43■□□□□ 0.7
CPSF4-201ENST00000292476 GMPSP49915 693 aaPredicted RBP19.43■□□□□ 0.7
CPSF4-201ENST00000292476 SEC23AQ15436 765 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 CDC42EP5Q6NZY7 148 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 C16orf86Q6ZW13 317 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 AGBL3Q8NEM8 1001 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 TNMDQ9H2S6 317 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 DHX36Q9H2U1 1008 aaKnown RBP19.43■□□□□ 0.7
CPSF4-201ENST00000292476 TAF1DQ9H5J8 278 aaPredicted RBP19.43■□□□□ 0.7
CPSF4-201ENST00000292476 TCP11L1Q9NUJ3 509 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 ZBTB12Q9Y330 459 aaPredicted RBP19.43■□□□□ 0.7
CPSF4-201ENST00000292476 PRDM1O75626 825 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 EPHX2P34913 555 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 EPS15P42566 896 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 TYRO3Q06418 890 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 DGKHQ86XP1 1220 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 ZKSCAN3Q9BRR0 538 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 NCOA5Q9HCD5 579 aaKnown RBP19.43■□□□□ 0.7
CPSF4-201ENST00000292476 SWAP70Q9UH65 585 aa19.43■□□□□ 0.7
CPSF4-201ENST00000292476 SAP30BPQ9UHR5 308 aaKnown RBP19.43■□□□□ 0.7
CPSF4-201ENST00000292476 WDHD1O75717 1129 aaPredicted RBP19.42■□□□□ 0.7
CPSF4-201ENST00000292476 CTDNEP1O95476 244 aa19.42■□□□□ 0.7
CPSF4-201ENST00000292476 EAPPQ56P03 285 aaPredicted RBP19.42■□□□□ 0.7
CPSF4-201ENST00000292476 MICU3Q86XE3 530 aa19.42■□□□□ 0.7
CPSF4-201ENST00000292476 RBM46Q8TBY0 533 aaKnown RBP19.42■□□□□ 0.7
CPSF4-201ENST00000292476 IDI2Q9BXS1 227 aa19.42■□□□□ 0.7
CPSF4-201ENST00000292476 DACT1Q9NYF0 836 aa19.42■□□□□ 0.7
CPSF4-201ENST00000292476 DDAH1O94760 285 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 TSPY3P0CV98 308 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 TSPY8P0CW00 308 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 PLCD1P51178 756 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 TFAP4Q01664 338 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 PICALMQ13492 652 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 PSME4Q14997 1843 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 FOCADQ5VW36 1801 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 FAM173BQ6P4H8 233 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 ZNF654Q8IZM8 581 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 ENAHQ8N8S7 591 aaPredicted RBP19.41■□□□□ 0.7
CPSF4-201ENST00000292476 NKX2-3Q8TAU0 364 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 WASF1Q92558 559 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 DDX11Q96FC9 970 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 ZNF396Q96N95 335 aaPredicted RBP19.41■□□□□ 0.7
CPSF4-201ENST00000292476 OSBPL5Q9H0X9 879 aaPredicted RBP19.41■□□□□ 0.7
CPSF4-201ENST00000292476 RBM28Q9NW13 759 aaKnown RBP19.41■□□□□ 0.7
CPSF4-201ENST00000292476 RCOR1Q9UKL0 485 aa19.41■□□□□ 0.7
CPSF4-201ENST00000292476 GOLGA6L6A8MZA4 724 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 CTAGE5O15320 804 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 RTN1Q16799 776 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 PIBF1Q8WXW3 757 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 GPRC5DQ9NZD1 345 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 TMOD2Q9NZR1 351 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 TFIP11Q9UBB9 837 aaKnown RBP19.4■□□□□ 0.7
CPSF4-201ENST00000292476 MRVI1Q9Y6F6 885 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 SHTN1A0MZ66 631 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 CDK8P49336 464 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 PPP4R3BQ5MIZ7 849 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 FANCBQ8NB91 859 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 ANKS1AQ92625 1134 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 PGBD1Q96JS3 809 aa19.4■□□□□ 0.7
CPSF4-201ENST00000292476 ORC3Q9UBD5 711 aaPredicted RBP19.4■□□□□ 0.7
CPSF4-201ENST00000292476 DDX60LQ5H9U9 1706 aaKnown RBP19.39■□□□□ 0.7
CPSF4-201ENST00000292476 CDK5RAP2Q96SN8 1893 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 STK36Q9NRP7 1315 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 RRP9O43818 475 aaKnown RBP19.39■□□□□ 0.69
CPSF4-201ENST00000292476 DTNBO60941 627 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 IFNAR1P17181 557 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 ADD1P35611 737 aaKnown RBP19.39■□□□□ 0.69
CPSF4-201ENST00000292476 CFAP100Q494V2 611 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 TRIM22Q8IYM9 498 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 BICD2Q8TD16 824 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 DYNLL2Q96FJ2 89 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 GMLQ99445 158 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 EHD4Q9H223 541 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 SERPINB13Q9UIV8 391 aa19.39■□□□□ 0.69
CPSF4-201ENST00000292476 ZNF646O15015 1829 aaPredicted RBP19.38■□□□□ 0.69
CPSF4-201ENST00000292476 SMIM22K7EJ46 135 aa19.38■□□□□ 0.69
CPSF4-201ENST00000292476 SSRP1Q08945 709 aaKnown RBP19.38■□□□□ 0.69
CPSF4-201ENST00000292476 FAM47AQ5JRC9 791 aa19.38■□□□□ 0.69
CPSF4-201ENST00000292476 SMC1BQ8NDV3 1235 aa19.38■□□□□ 0.69
CPSF4-201ENST00000292476 MAP3K14Q99558 947 aa19.38■□□□□ 0.69
CPSF4-201ENST00000292476 KAT14Q9H8E8 782 aa19.38■□□□□ 0.69
CPSF4-201ENST00000292476 SENP2Q9HC62 589 aa19.38■□□□□ 0.69
CPSF4-201ENST00000292476 CLEC11AQ9Y240 323 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms