RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 GJD2Q9UKL4 321 aa15.47■□□□□ 0.07
CD44-203ENST00000278386 RPTORQ8N122 1335 aa15.46■□□□□ 0.07
CD44-203ENST00000278386 ZNF532Q9HCE3 1301 aa15.46■□□□□ 0.07
CD44-203ENST00000278386 ZKSCAN1P17029 563 aaPredicted RBP15.46■□□□□ 0.07
CD44-203ENST00000278386 PLCD1P51178 756 aa15.46■□□□□ 0.07
CD44-203ENST00000278386 DIS3LQ8TF46 1054 aaKnown RBP15.46■□□□□ 0.07
CD44-203ENST00000278386 PAWRQ96IZ0 340 aaKnown RBP15.46■□□□□ 0.07
CD44-203ENST00000278386 C12orf42Q96LP6 360 aa15.46■□□□□ 0.07
CD44-203ENST00000278386 CRISPLD2Q9H0B8 497 aa15.46■□□□□ 0.07
CD44-203ENST00000278386 PORCNQ9H237 461 aa15.46■□□□□ 0.07
CD44-203ENST00000278386 MCM9Q9NXL9 1143 aa15.46■□□□□ 0.07
CD44-203ENST00000278386 A0A0G2JMZ2 1700 aa15.46■□□□□ 0.06
CD44-203ENST00000278386 USP17L15C9J2P7 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 USP17L13C9JLJ4 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 USP17L11C9JVI0 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 USP17L18D6R9N7 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 USP17L22D6RA61 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 USP17L17D6RBQ6 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 USP17L19D6RCP7 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 USP17L20D6RJB6 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 MPHOSPH10O00566 681 aaKnown RBP15.45■□□□□ 0.06
CD44-203ENST00000278386 RAB11FIP3O75154 756 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 PRKAR2AP13861 404 aaKnown RBP15.45■□□□□ 0.06
CD44-203ENST00000278386 VCAM1P19320 739 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 SHMT1P34896 483 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 USP17L24Q0WX57 530 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 WDR78Q5VTH9 848 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 GPR142Q7Z601 462 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 NECAB2Q7Z6G3 386 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 LCORLQ8N3X6 602 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.45■□□□□ 0.06
CD44-203ENST00000278386 SDR42E1Q8WUS8 393 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 CHMP4BQ9H444 224 aaKnown RBP15.45■□□□□ 0.06
CD44-203ENST00000278386 RBM27Q9P2N5 1060 aaKnown RBP15.45■□□□□ 0.06
CD44-203ENST00000278386 RBPJLQ9UBG7 517 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 PARP14Q460N5 1801 aa15.45■□□□□ 0.06
CD44-203ENST00000278386 RGS2P41220 211 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 Q3C1V9 767 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 PLEKHH3Q7Z736 793 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 ANKLE1Q8NAG6 615 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 ACER1Q8TDN7 264 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 EDC3Q96F86 508 aaKnown RBP15.44■□□□□ 0.06
CD44-203ENST00000278386 APBA2Q99767 749 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 KIAA1683Q9H0B3 1180 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 ZBTB40Q9NUA8 1239 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 PAG1Q9NWQ8 432 aa15.44■□□□□ 0.06
CD44-203ENST00000278386 CCNA1P78396 465 aa15.43■□□□□ 0.06
CD44-203ENST00000278386 SEPT2Q15019 361 aa15.43■□□□□ 0.06
CD44-203ENST00000278386 SIRT2Q8IXJ6 389 aa15.43■□□□□ 0.06
CD44-203ENST00000278386 TRMT44Q8IYL2 757 aaKnown RBP15.43■□□□□ 0.06
CD44-203ENST00000278386 BOLA2Q9H3K6 86 aa15.43■□□□□ 0.06
CD44-203ENST00000278386 RPAP3Q9H6T3 665 aaPredicted RBP15.43■□□□□ 0.06
CD44-203ENST00000278386 ARMT1Q9H993 441 aa15.43■□□□□ 0.06
CD44-203ENST00000278386 RCAN3Q9UKA8 241 aa15.43■□□□□ 0.06
CD44-203ENST00000278386 RABGAP1Q9Y3P9 1069 aa15.43■□□□□ 0.06
CD44-203ENST00000278386 TCRBV5S4A2TA0A5A2 114 aa15.42■□□□□ 0.06
CD44-203ENST00000278386 GLRX3O76003 335 aaKnown RBP15.42■□□□□ 0.06
CD44-203ENST00000278386 XRCC5P13010 732 aaKnown RBP15.42■□□□□ 0.06
CD44-203ENST00000278386 EVX2Q03828 476 aa15.42■□□□□ 0.06
CD44-203ENST00000278386 GABPAQ06546 454 aa15.42■□□□□ 0.06
CD44-203ENST00000278386 CATSPERGQ6ZRH7 1159 aa15.42■□□□□ 0.06
CD44-203ENST00000278386 C7orf61Q8IZ16 206 aa15.42■□□□□ 0.06
CD44-203ENST00000278386 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.42■□□□□ 0.06
CD44-203ENST00000278386 DCP1AQ9NPI6 582 aaPredicted RBP15.42■□□□□ 0.06
CD44-203ENST00000278386 RLFQ13129 1914 aa15.42■□□□□ 0.06
CD44-203ENST00000278386 COL11A1P12107 1806 aaPredicted RBP15.42■□□□□ 0.06
CD44-203ENST00000278386 ZNF236Q9UL36 1845 aa15.42■□□□□ 0.06
CD44-203ENST00000278386 CNMDO75829 334 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 MBD4O95243 580 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 CYP2D6P10635 497 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 GUCY1A2P33402 732 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 ADD2P35612 726 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 CCL14Q16627 93 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 MORN1Q5T089 497 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 AMOTL1Q8IY63 956 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 SLC44A5Q8NCS7 719 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 TANGO6Q9C0B7 1094 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 NBPF3Q9H094 633 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 C11orf49Q9H6J7 331 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 IVNS1ABPQ9Y6Y0 642 aa15.41■□□□□ 0.06
CD44-203ENST00000278386 SPDYE16A6NNV3 312 aaPredicted RBP15.4■□□□□ 0.06
CD44-203ENST00000278386 CACNB2Q08289 660 aaPredicted RBP15.4■□□□□ 0.06
CD44-203ENST00000278386 MAP2K5Q13163 448 aa15.4■□□□□ 0.06
CD44-203ENST00000278386 MAP3K21Q5TCX8 1036 aa15.4■□□□□ 0.06
CD44-203ENST00000278386 POTEEQ6S8J3 1075 aa15.4■□□□□ 0.06
CD44-203ENST00000278386 SWAP70Q9UH65 585 aa15.4■□□□□ 0.06
CD44-203ENST00000278386 OGDHLQ9ULD0 1010 aa15.4■□□□□ 0.06
CD44-203ENST00000278386 PRKAB2O43741 272 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 ATP5JP18859 108 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 CCND3P30281 292 aaPredicted RBP15.39■□□□□ 0.05
CD44-203ENST00000278386 SLFNL1Q499Z3 407 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 TMEM179Q6ZVK1 233 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 USP6NLQ92738 828 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 DYNLL2Q96FJ2 89 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 DDRGK1Q96HY6 314 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 HAUS7Q99871 368 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 LRRCC1Q9C099 1032 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 ARHGEF10LQ9HCE6 1279 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 BTBD7Q9P203 1132 aa15.39■□□□□ 0.05
CD44-203ENST00000278386 ZMYND8Q9ULU4 1186 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms