RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 HNRNPUQ00839 825 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS50-201ENST00000251739 PABPC4Q13310 644 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS50-201ENST00000251739 OS9Q13438 667 aaPredicted RBP12.62□□□□□ -0.39
VPS50-201ENST00000251739 CEP85Q6P2H3 762 aa12.62□□□□□ -0.39
VPS50-201ENST00000251739 TGFBRAP1Q8WUH2 860 aa12.62□□□□□ -0.39
VPS50-201ENST00000251739 PRO3102Q9H379 93 aa12.62□□□□□ -0.39
VPS50-201ENST00000251739 AS3MTQ9HBK9 375 aa12.62□□□□□ -0.39
VPS50-201ENST00000251739 GPHNQ9NQX3 736 aaPredicted RBP12.62□□□□□ -0.39
VPS50-201ENST00000251739 BIN2Q9UBW5 565 aaPredicted RBP12.62□□□□□ -0.39
VPS50-201ENST00000251739 GJD2Q9UKL4 321 aa12.62□□□□□ -0.39
VPS50-201ENST00000251739 ZBTB21Q9ULJ3 1066 aa12.62□□□□□ -0.39
VPS50-201ENST00000251739 MYH7P12883 1935 aa12.61□□□□□ -0.39
VPS50-201ENST00000251739 MYH8P13535 1937 aa12.61□□□□□ -0.39
VPS50-201ENST00000251739 MTMR2Q13614 643 aa12.61□□□□□ -0.39
VPS50-201ENST00000251739 FOXP4Q8IVH2 680 aaPredicted RBP12.61□□□□□ -0.39
VPS50-201ENST00000251739 ITPRIPQ8IWB1 547 aa12.61□□□□□ -0.39
VPS50-201ENST00000251739 FTSJ3Q8IY81 847 aaKnown RBP12.61□□□□□ -0.39
VPS50-201ENST00000251739 COA7Q96BR5 231 aa12.61□□□□□ -0.39
VPS50-201ENST00000251739 PALD1Q9ULE6 856 aa12.61□□□□□ -0.39
VPS50-201ENST00000251739 ZBED9Q6R2W3 1325 aa12.61□□□□□ -0.39
VPS50-201ENST00000251739 RLFQ13129 1914 aa12.6□□□□□ -0.39
VPS50-201ENST00000251739 A0A0G2JMZ2 1700 aa12.6□□□□□ -0.39
VPS50-201ENST00000251739 C2orf72A6NCS6 295 aa12.6□□□□□ -0.39
VPS50-201ENST00000251739 DYNLL1P63167 89 aaKnown RBP12.6□□□□□ -0.39
VPS50-201ENST00000251739 TMED8Q6PL24 325 aaPredicted RBP12.6□□□□□ -0.39
VPS50-201ENST00000251739 POTEEQ6S8J3 1075 aa12.6□□□□□ -0.39
VPS50-201ENST00000251739 TMC2Q8TDI7 906 aa12.6□□□□□ -0.39
VPS50-201ENST00000251739 HTATIP2Q9BUP3 242 aa12.6□□□□□ -0.39
VPS50-201ENST00000251739 CCDC8Q9H0W5 538 aaPredicted RBP12.6□□□□□ -0.39
VPS50-201ENST00000251739 PARP14Q460N5 1801 aa12.6□□□□□ -0.39
VPS50-201ENST00000251739 C19orf81C9J6K1 198 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 GDF11O95390 407 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 HMGCRP04035 888 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 CYP7A1P22680 504 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 HERVK_113P62684 666 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 MFSD10Q14728 455 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 TATDN1Q6P1N9 297 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 CERS3Q8IU89 383 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 C12orf42Q96LP6 360 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 DEFB118Q96PH6 123 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.59□□□□□ -0.39
VPS50-201ENST00000251739 EHD4Q9H223 541 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 TXNRD2Q9NNW7 524 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 NDUFB9Q9Y6M9 179 aa12.59□□□□□ -0.39
VPS50-201ENST00000251739 ZNF236Q9UL36 1845 aa12.58□□□□□ -0.4
VPS50-201ENST00000251739 USP17L10C9JJH3 530 aa12.58□□□□□ -0.4
VPS50-201ENST00000251739 IDH1O75874 414 aaKnown RBP12.58□□□□□ -0.4
VPS50-201ENST00000251739 MAP3K21Q5TCX8 1036 aa12.58□□□□□ -0.4
VPS50-201ENST00000251739 CRACR2BQ8N4Y2 399 aaPredicted RBP12.58□□□□□ -0.4
VPS50-201ENST00000251739 MIGA1Q8NAN2 632 aa12.58□□□□□ -0.4
VPS50-201ENST00000251739 P2RX7Q99572 595 aaKnown RBP12.58□□□□□ -0.4
VPS50-201ENST00000251739 RIOK1Q9BRS2 568 aaKnown RBP12.58□□□□□ -0.4
VPS50-201ENST00000251739 ANTXR1Q9H6X2 564 aa12.58□□□□□ -0.4
VPS50-201ENST00000251739 EMILIN3Q9NT22 766 aa12.58□□□□□ -0.4
VPS50-201ENST00000251739 SAP30BPQ9UHR5 308 aaKnown RBP12.58□□□□□ -0.4
VPS50-201ENST00000251739 EXOC6BQ9Y2D4 811 aa12.58□□□□□ -0.4
VPS50-201ENST00000251739 BAZ2AQ9UIF9 1905 aaKnown RBP12.58□□□□□ -0.4
VPS50-201ENST00000251739 PEX10O60683 326 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 HLA-DOAP06340 250 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 IRX3P78415 501 aaPredicted RBP12.57□□□□□ -0.4
VPS50-201ENST00000251739 TRIM32Q13049 653 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 ERC1Q8IUD2 1116 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 MAGEB6Q8N7X4 407 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 PANK1Q8TE04 598 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 TRIB2Q92519 343 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 USP6NLQ92738 828 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 DPF3Q92784 378 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 TMOD4Q9NZQ9 345 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 RBM27Q9P2N5 1060 aaKnown RBP12.57□□□□□ -0.4
VPS50-201ENST00000251739 RBPJLQ9UBG7 517 aa12.57□□□□□ -0.4
VPS50-201ENST00000251739 DNAH12Q6ZR08 3092 aa12.56□□□□□ -0.4
VPS50-201ENST00000251739 GH2P01242 217 aa12.56□□□□□ -0.4
VPS50-201ENST00000251739 XRCC5P13010 732 aaKnown RBP12.56□□□□□ -0.4
VPS50-201ENST00000251739 FOXK1P85037 733 aa12.56□□□□□ -0.4
VPS50-201ENST00000251739 AACSQ86V21 672 aa12.56□□□□□ -0.4
VPS50-201ENST00000251739 ANKLE1Q8NAG6 615 aa12.56□□□□□ -0.4
VPS50-201ENST00000251739 DIS3LQ8TF46 1054 aaKnown RBP12.56□□□□□ -0.4
VPS50-201ENST00000251739 GTF3C2Q8WUA4 911 aaPredicted RBP12.56□□□□□ -0.4
VPS50-201ENST00000251739 LARP6Q9BRS8 491 aaKnown RBP12.56□□□□□ -0.4
VPS50-201ENST00000251739 SERPINB13Q9UIV8 391 aa12.56□□□□□ -0.4
VPS50-201ENST00000251739 NR2E3Q9Y5X4 410 aa12.56□□□□□ -0.4
VPS50-201ENST00000251739 RPTORQ8N122 1335 aa12.56□□□□□ -0.4
VPS50-201ENST00000251739 TFRCP02786 760 aaKnown RBP12.55□□□□□ -0.4
VPS50-201ENST00000251739 SHMT1P34896 483 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 ERVK-9P63128 1117 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 ERVK-24P63145 666 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 GABPAQ06546 454 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 MAP3K12Q12852 859 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 USP17L2Q6R6M4 530 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 GPRC5AQ8NFJ5 357 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 RHPN1Q8TCX5 695 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 SOCS4Q8WXH5 440 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 PAWRQ96IZ0 340 aaKnown RBP12.55□□□□□ -0.4
VPS50-201ENST00000251739 TRIM34Q9BYJ4 488 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 PORCNQ9H237 461 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 CUL9Q8IWT3 2517 aa12.55□□□□□ -0.4
VPS50-201ENST00000251739 A0A1W2PPC1 479 aa12.54□□□□□ -0.4
VPS50-201ENST00000251739 CNMDO75829 334 aa12.54□□□□□ -0.4
VPS50-201ENST00000251739 PDE6AP16499 860 aa12.54□□□□□ -0.4
VPS50-201ENST00000251739 MAPK4P31152 587 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms