RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 GPR75-ASB3A0A0A6YYF3 556 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 F13A1P00488 732 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 INTS4Q96HW7 963 aaKnown RBP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 INCENPQ9NQS7 918 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 GAKO14976 1311 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 CPLX1O14810 134 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 RNF113AO15541 343 aaKnown RBP10.11□□□□□ -0.79
VPS4B-201ENST00000238497 ENTPD3O75355 529 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 TM4SF4P48230 202 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 GTF2A2P52657 109 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 CKAP2LQ8IYA6 745 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 ZNF384Q8TF68 577 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 ZSCAN31Q96LW9 406 aaPredicted RBP10.11□□□□□ -0.79
VPS4B-201ENST00000238497 SAGE1Q9NXZ1 904 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 SNCAIPQ9Y6H5 919 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 U3KPZ7 1027 aaPredicted RBP10.11□□□□□ -0.79
VPS4B-201ENST00000238497 M0R2C6 588 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 MYCP01106 439 aaPredicted RBP10.11□□□□□ -0.79
VPS4B-201ENST00000238497 HSPD1P10809 573 aaKnown RBP10.11□□□□□ -0.79
VPS4B-201ENST00000238497 SNAPC2Q13487 334 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 NFXL1Q6ZNB6 911 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 SYAP1Q96A49 352 aaPredicted RBP10.11□□□□□ -0.79
VPS4B-201ENST00000238497 PUS7LQ9H0K6 701 aaKnown RBP10.11□□□□□ -0.79
VPS4B-201ENST00000238497 MTMR7Q9Y216 660 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 ATP6V1DQ9Y5K8 247 aa10.11□□□□□ -0.79
VPS4B-201ENST00000238497 TRIM75PA6NK02 468 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 FKTNO75072 461 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 PLCG2P16885 1265 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 GADL1Q6ZQY3 521 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 BRI3BPQ8WY22 251 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.1□□□□□ -0.79
VPS4B-201ENST00000238497 TRIM17Q9Y577 477 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 FSD2A1L4K1 749 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 SPDYE5A6NIY4 337 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 RHBDL3P58872 404 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 TRDNQ13061 729 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 CRHR2Q13324 411 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 FAM163AQ96GL9 167 aaPredicted RBP10.1□□□□□ -0.79
VPS4B-201ENST00000238497 IDI2Q9BXS1 227 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 SH2B1Q9NRF2 756 aaPredicted RBP10.1□□□□□ -0.79
VPS4B-201ENST00000238497 PDS5AQ29RF7 1337 aaKnown RBP10.1□□□□□ -0.79
VPS4B-201ENST00000238497 MBD3O95983 291 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 POLR3DP05423 398 aaPredicted RBP10.1□□□□□ -0.79
VPS4B-201ENST00000238497 CETPP11597 493 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 ATP2B1P20020 1258 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 CTU1Q7Z7A3 348 aaKnown RBP10.1□□□□□ -0.79
VPS4B-201ENST00000238497 ADGRA1Q86SQ6 560 aa10.1□□□□□ -0.79
VPS4B-201ENST00000238497 ZNF213O14771 459 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 GNL2Q13823 731 aaKnown RBP10.09□□□□□ -0.79
VPS4B-201ENST00000238497 ANKRD1Q15327 319 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 STOX1Q6ZVD7 989 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 SH3BP5LQ7L8J4 393 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 PTPN18Q99952 460 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 ZKSCAN3Q9BRR0 538 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 ZFYVE28Q9HCC9 887 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 GJB4Q9NTQ9 266 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 MYH13Q9UKX3 1938 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 MINDY4BA8MYZ0 360 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 HLA-DOAP06340 250 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 TOB2Q14106 344 aaPredicted RBP10.09□□□□□ -0.79
VPS4B-201ENST00000238497 FAM43AQ8N2R8 423 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 SPATA32Q96LK8 384 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 FTOQ9C0B1 505 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS4B-201ENST00000238497 OSBPL5Q9H0X9 879 aaPredicted RBP10.09□□□□□ -0.79
VPS4B-201ENST00000238497 MTMR6Q9Y217 621 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 E7EWF7 191 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 FGAP02671 866 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 MSNP26038 577 aaKnown RBP10.09□□□□□ -0.79
VPS4B-201ENST00000238497 KRT32Q14532 448 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 TTF1Q15361 905 aaPredicted RBP10.09□□□□□ -0.79
VPS4B-201ENST00000238497 IMMTQ16891 758 aaKnown RBP10.09□□□□□ -0.79
VPS4B-201ENST00000238497 CD99L2Q8TCZ2 262 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 PIBF1Q8WXW3 757 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 MYL10Q9BUA6 226 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 TSPY26PQ9H489 355 aa10.09□□□□□ -0.79
VPS4B-201ENST00000238497 GPAA1O43292 621 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 KRT85P78386 507 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 AKAP11Q9UKA4 1901 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 MYH2Q9UKX2 1941 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 MAGEB6P1A0A0J9YX57 407 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 UNCXA6NJT0 531 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 BTBD19C9JJ37 291 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 GDF11O95390 407 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 PPATQ06203 517 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 PPIL2Q13356 520 aa10.08□□□□□ -0.8
VPS4B-201ENST00000238497 ZNF830Q96NB3 372 aaPredicted RBP10.08□□□□□ -0.8
VPS4B-201ENST00000238497 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS4B-201ENST00000238497 KCNA4P22459 653 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 SOX10P56693 466 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 SP3Q02447 781 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 SPP2Q13103 211 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 SF3A1Q15459 793 aaKnown RBP10.07□□□□□ -0.8
VPS4B-201ENST00000238497 MICU3Q86XE3 530 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 SCYL3Q8IZE3 742 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 SMCR8Q8TEV9 937 aaPredicted RBP10.07□□□□□ -0.8
VPS4B-201ENST00000238497 ERCC4Q92889 916 aaPredicted RBP10.07□□□□□ -0.8
VPS4B-201ENST00000238497 EFCC1Q9HA90 598 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 PI4KBQ9UBF8 816 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 PDE4DIPQ5VU43 2346 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 ZNF532Q9HCE3 1301 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms