RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 FGAP02671 866 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 PECAM1P16284 738 aaPredicted RBP15.4■□□□□ 0.06
GABPB1-201ENST00000220429 CRKLP46109 303 aaKnown RBP15.4■□□□□ 0.06
GABPB1-201ENST00000220429 HAND2P61296 217 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 PDCD2Q16342 344 aaPredicted RBP15.4■□□□□ 0.06
GABPB1-201ENST00000220429 SLC5A9Q2M3M2 681 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 TBC1D25Q3MII6 688 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 SUSD4Q5VX71 490 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 TRIM74Q86UV6 250 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 TRIM73Q86UV7 250 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 ZNF512BQ96KM6 892 aaPredicted RBP15.4■□□□□ 0.06
GABPB1-201ENST00000220429 LLPHQ9BRT6 129 aaKnown RBP15.4■□□□□ 0.06
GABPB1-201ENST00000220429 LTBP4Q8N2S1 1624 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 ARAP2Q8WZ64 1704 aa15.4■□□□□ 0.06
GABPB1-201ENST00000220429 SHOX2O60902 331 aaPredicted RBP15.39■□□□□ 0.05
GABPB1-201ENST00000220429 IBSPP21815 317 aaPredicted RBP15.39■□□□□ 0.05
GABPB1-201ENST00000220429 PIK3R5Q8WYR1 880 aa15.39■□□□□ 0.05
GABPB1-201ENST00000220429 SPATA32Q96LK8 384 aa15.39■□□□□ 0.05
GABPB1-201ENST00000220429 TFIP11Q9UBB9 837 aaKnown RBP15.39■□□□□ 0.05
GABPB1-201ENST00000220429 DDX60Q8IY21 1712 aaKnown RBP15.39■□□□□ 0.05
GABPB1-201ENST00000220429 GPAA1O43292 621 aa15.39■□□□□ 0.05
GABPB1-201ENST00000220429 RESTQ13127 1097 aa15.39■□□□□ 0.05
GABPB1-201ENST00000220429 LOC102724428A0A0B4J2F2 783 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 PHKA1P46020 1223 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 SIK1P57059 783 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 ITPK1Q13572 414 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 SNX1Q13596 522 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 NAA25Q14CX7 972 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 ZSCAN12O43309 604 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 PDIA3P30101 505 aaKnown RBP15.38■□□□□ 0.05
GABPB1-201ENST00000220429 ADD2P35612 726 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 CHMP4BP1P59074 171 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 GNG11P61952 73 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 IMMTQ16891 758 aaKnown RBP15.38■□□□□ 0.05
GABPB1-201ENST00000220429 CCDC102BQ68D86 513 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 HELBQ8NG08 1087 aaPredicted RBP15.38■□□□□ 0.05
GABPB1-201ENST00000220429 ZBTB10Q96DT7 871 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 WDR24Q96S15 920 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 PNKPQ96T60 521 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 NCOA5Q9HCD5 579 aaKnown RBP15.38■□□□□ 0.05
GABPB1-201ENST00000220429 PIH1D3Q9NQM4 214 aaKnown RBP15.38■□□□□ 0.05
GABPB1-201ENST00000220429 KLC4Q9NSK0 619 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 SPATA31A5Q5VU36 1347 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 SPATA31A7Q8IWB4 1347 aa15.38■□□□□ 0.05
GABPB1-201ENST00000220429 PTPDC1A2A3K4 754 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 H3BQV1 296 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 IFFO2Q5TF58 517 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 RPUSD2Q8IZ73 545 aaKnown RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 ZNF274Q96GC6 653 aaPredicted RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 NAT10Q9H0A0 1025 aaKnown RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 GPHNQ9NQX3 736 aaPredicted RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 CICQ96RK0 1608 aaPredicted RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 SHTN1A0MZ66 631 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 VWA3AA6NCI4 1184 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 CAMTA2O94983 1202 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 NEFHP12036 1026 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 FGFR2P21802 821 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 CEP85LQ5SZL2 805 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 ARMC3Q5W041 872 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 FBXL16Q8N461 479 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 DRAXINQ8NBI3 349 aaPredicted RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 MSANTD4Q8NCY6 345 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 LEO1Q8WVC0 666 aaPredicted RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 SMARCC1Q92922 1105 aaPredicted RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 ZSWIM4Q9H7M6 989 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 DDX20Q9UHI6 824 aaKnown RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 SALL1Q9NSC2 1324 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 PRPF6O94906 941 aaKnown RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 ACTN3Q08043 901 aaPredicted RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 PUM3Q15397 648 aaKnown RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 SLC9C2Q5TAH2 1124 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 KIRREL3Q8IZU9 778 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 AOPEPQ8N6M6 819 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 DHX58Q96C10 678 aa15.37■□□□□ 0.05
GABPB1-201ENST00000220429 XPO4Q9C0E2 1151 aaKnown RBP15.37■□□□□ 0.05
GABPB1-201ENST00000220429 MROH5Q6ZUA9 1318 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 ATXN2Q99700 1313 aaKnown RBP15.36■□□□□ 0.05
GABPB1-201ENST00000220429 NUTM2BA6NNL0 878 aaPredicted RBP15.36■□□□□ 0.05
GABPB1-201ENST00000220429 NUTM2EB1AL46 878 aaPredicted RBP15.36■□□□□ 0.05
GABPB1-201ENST00000220429 PEX19P40855 299 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 PRPHP41219 470 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 IRAK1P51617 712 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 NUTM2AQ8IVF1 878 aaPredicted RBP15.36■□□□□ 0.05
GABPB1-201ENST00000220429 MB21D2Q8IYB1 491 aaPredicted RBP15.36■□□□□ 0.05
GABPB1-201ENST00000220429 BCAS4Q8TDM0 211 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 GBP3Q9H0R5 595 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 ATRNO75882 1429 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 SYF2O95926 243 aaKnown RBP15.36■□□□□ 0.05
GABPB1-201ENST00000220429 TTF1Q15361 905 aaPredicted RBP15.36■□□□□ 0.05
GABPB1-201ENST00000220429 SRGAP1Q7Z6B7 1085 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 CEP57Q86XR8 500 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 LPIN2Q92539 896 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 SAAL1Q96ER3 474 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 SEC31BQ9NQW1 1179 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 ANO10Q9NW15 660 aa15.36■□□□□ 0.05
GABPB1-201ENST00000220429 LRRIQ3A6PVS8 624 aaPredicted RBP15.35■□□□□ 0.05
GABPB1-201ENST00000220429 SNAP23O00161 211 aa15.35■□□□□ 0.05
GABPB1-201ENST00000220429 KIAA0754O94854 1291 aa15.35■□□□□ 0.05
GABPB1-201ENST00000220429 EZRP15311 586 aaKnown RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms