RNA–Protein interactions for RNA: ENSMUST00000007584.3

Pcdhac1-201, Transcript of Protocadherin alpha C1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcdhac1, Length 5,419 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhac1-201ENSMUST00000007584 Herc1E9PZP8 4859 aa3.64□□□□□ -1.83
Pcdhac1-201ENSMUST00000007584 Gm7735D3YX18 52 aa3.64□□□□□ -1.83
Pcdhac1-201ENSMUST00000007584 Krtap4-16Q91W93 202 aa3.63□□□□□ -1.83
Pcdhac1-201ENSMUST00000007584 A0A1Y7VJ07 166 aa3.61□□□□□ -1.83
Pcdhac1-201ENSMUST00000007584 Lce1a2Q9D1K4 149 aa3.58□□□□□ -1.84
Pcdhac1-201ENSMUST00000007584 Ubr4A2AN08 5180 aa3.48□□□□□ -1.85
Pcdhac1-201ENSMUST00000007584 Gm10061D3Z714 54 aa3.47□□□□□ -1.85
Pcdhac1-201ENSMUST00000007584 ZanO88799 5376 aa3.47□□□□□ -1.85
Pcdhac1-201ENSMUST00000007584 4932415D10RikA0A1W2P6U8 4986 aa3.46□□□□□ -1.85
Pcdhac1-201ENSMUST00000007584 Ush2AQ2QI47 5193 aa3.46□□□□□ -1.85
Pcdhac1-201ENSMUST00000007584 Krtap17-1A2A5X6 109 aa3.44□□□□□ -1.86
Pcdhac1-201ENSMUST00000007584 Fat4Q2PZL6 4981 aa3.41□□□□□ -1.86
Pcdhac1-201ENSMUST00000007584 Mt4P47945 62 aa3.41□□□□□ -1.86
Pcdhac1-201ENSMUST00000007584 Gm11562A0PK51 136 aa3.39□□□□□ -1.87
Pcdhac1-201ENSMUST00000007584 ObscnA2AAJ9 8891 aaKnown RBP3.38□□□□□ -1.87
Pcdhac1-201ENSMUST00000007584 Gm11569B1AQB1 180 aa3.37□□□□□ -1.87
Pcdhac1-201ENSMUST00000007584 Hmcn2A2AJ76 5100 aa3.37□□□□□ -1.87
Pcdhac1-201ENSMUST00000007584 Krtap31-2Q8CAY5 177 aa3.36□□□□□ -1.87
Pcdhac1-201ENSMUST00000007584 Rnf213E9Q555 5152 aaKnown RBP3.28□□□□□ -1.88
Pcdhac1-201ENSMUST00000007584 Krtap4-6Q3V4B7 195 aa3.23□□□□□ -1.89
Pcdhac1-201ENSMUST00000007584 Lce1a1Q9CQH5 143 aa3.2□□□□□ -1.9
Pcdhac1-201ENSMUST00000007584 A030014E15RikA0A1Y7VJV2 120 aa3.2□□□□□ -1.9
Pcdhac1-201ENSMUST00000007584 SspoQ8CG65 4998 aa3.19□□□□□ -1.9
Pcdhac1-201ENSMUST00000007584 Lce1kJ3QP15 125 aa3.19□□□□□ -1.9
Pcdhac1-201ENSMUST00000007584 Mt3P28184 68 aa3.15□□□□□ -1.9
Pcdhac1-201ENSMUST00000007584 Muc5bE9Q5I3 4800 aa3.15□□□□□ -1.91
Pcdhac1-201ENSMUST00000007584 Fsip2A2ARZ3 6995 aa3.14□□□□□ -1.91
Pcdhac1-201ENSMUST00000007584 2300003K06RikA2A4M0 262 aa3.12□□□□□ -1.91
Pcdhac1-201ENSMUST00000007584 Krtap4-2B1AQ85 167 aa3.07□□□□□ -1.92
Pcdhac1-201ENSMUST00000007584 Syne2Q6ZWQ0 6874 aaKnown RBP3.07□□□□□ -1.92
Pcdhac1-201ENSMUST00000007584 Krtap4-7Q9D732 168 aa3.06□□□□□ -1.92
Pcdhac1-201ENSMUST00000007584 Krtap4-1Q3UUY3 169 aa3.06□□□□□ -1.92
Pcdhac1-201ENSMUST00000007584 Krtap4-9B1AQA9 244 aa3.02□□□□□ -1.93
Pcdhac1-201ENSMUST00000007584 Mt1P02802 61 aaKnown RBP3.01□□□□□ -1.93
Pcdhac1-201ENSMUST00000007584 Gm11564A2A4L9 201 aa2.97□□□□□ -1.93
Pcdhac1-201ENSMUST00000007584 Gm11563B1AQ90 168 aa2.97□□□□□ -1.93
Pcdhac1-201ENSMUST00000007584 Gm11595B1AQA7 289 aa2.97□□□□□ -1.93
Pcdhac1-201ENSMUST00000007584 Krtap4-8B1AQA8 209 aa2.97□□□□□ -1.93
Pcdhac1-201ENSMUST00000007584 Krtap4-13Q9D7P3 165 aa2.96□□□□□ -1.94
Pcdhac1-201ENSMUST00000007584 Sprr2bO70554 98 aa2.94□□□□□ -1.94
Pcdhac1-201ENSMUST00000007584 Gm11596B1AQB0 205 aa2.88□□□□□ -1.95
Pcdhac1-201ENSMUST00000007584 Macf1Q9QXZ0 7354 aaKnown RBP2.81□□□□□ -1.96
Pcdhac1-201ENSMUST00000007584 Gm11554B1AQB2 190 aa2.74□□□□□ -1.97
Pcdhac1-201ENSMUST00000007584 DstQ91ZU6 7393 aaKnown RBP2.67□□□□□ -1.98
Pcdhac1-201ENSMUST00000007584 Muc19Q6PZE0 7524 aa2.65□□□□□ -1.98
Pcdhac1-201ENSMUST00000007584 Kmt2dQ6PDK2 5588 aa2.63□□□□□ -1.99
Pcdhac1-201ENSMUST00000007584 Krtap20-2E9Q0A8 60 aa2.62□□□□□ -1.99
Pcdhac1-201ENSMUST00000007584 Gm11555B1AQ89 175 aa2.61□□□□□ -1.99
Pcdhac1-201ENSMUST00000007584 Krtap6-3A0A087WQL6 57 aa2.6□□□□□ -1.99
Pcdhac1-201ENSMUST00000007584 NebE9Q1W3 7152 aa2.59□□□□□ -1.99
Pcdhac1-201ENSMUST00000007584 A0A286YCP9 139 aa2.55□□□□□ -2
Pcdhac1-201ENSMUST00000007584 1110025L11RikO09048 78 aa2.46□□□□□ -2.02
Pcdhac1-201ENSMUST00000007584 Krtap6-5Q925H3 78 aa2.46□□□□□ -2.02
Pcdhac1-201ENSMUST00000007584 Eppk1Q8R0W0 6548 aa2.43□□□□□ -2.02
Pcdhac1-201ENSMUST00000007584 Phgr1Q8K0G7 91 aa2.43□□□□□ -2.02
Pcdhac1-201ENSMUST00000007584 Gm10229O08631 77 aa2.33□□□□□ -2.04
Pcdhac1-201ENSMUST00000007584 Gm11568A2A4M2 211 aa2.27□□□□□ -2.05
Pcdhac1-201ENSMUST00000007584 Krtap9-1Q64526 186 aa2.27□□□□□ -2.05
Pcdhac1-201ENSMUST00000007584 Gm11567Q9D141 195 aa2.14□□□□□ -2.07
Pcdhac1-201ENSMUST00000007584 Gm11559Q9D3H7 191 aa2.14□□□□□ -2.07
Pcdhac1-201ENSMUST00000007584 Krtap5-2Q9D5Z7 189 aa2.12□□□□□ -2.07
Pcdhac1-201ENSMUST00000007584 Gm11639A0A1D5RLM8 5808 aa2.06□□□□□ -2.08
Pcdhac1-201ENSMUST00000007584 Hmcn1D3YXG0 5634 aa1.99□□□□□ -2.09
Pcdhac1-201ENSMUST00000007584 Gm10153A0A1B0GRL1 320 aa1.97□□□□□ -2.09
Pcdhac1-201ENSMUST00000007584 Gpr98Q8VHN7 6298 aaKnown RBP1.96□□□□□ -2.09
Pcdhac1-201ENSMUST00000007584 Gm4553A0A1B0GSA9 284 aa1.94□□□□□ -2.1
Pcdhac1-201ENSMUST00000007584 Gm2431E9Q8S1 172 aa1.89□□□□□ -2.11
Pcdhac1-201ENSMUST00000007584 Gm45337A0A1B0GS71 263 aa1.85□□□□□ -2.11
Pcdhac1-201ENSMUST00000007584 Krtap6-2O08884 159 aa1.84□□□□□ -2.12
Pcdhac1-201ENSMUST00000007584 Gm40460A0A1B0GR10 244 aa1.8□□□□□ -2.12
Pcdhac1-201ENSMUST00000007584 Gm7579A0A1B0GRJ4 243 aa1.8□□□□□ -2.12
Pcdhac1-201ENSMUST00000007584 Krtap5-5Q2TA51 241 aa1.8□□□□□ -2.12
Pcdhac1-201ENSMUST00000007584 Krtap5-4Q62220 223 aa1.8□□□□□ -2.12
Pcdhac1-201ENSMUST00000007584 Krtap21-1Q925H4 128 aa1.71□□□□□ -2.14
Pcdhac1-201ENSMUST00000007584 Gm39115A0A1B0GSH7 232 aa1.7□□□□□ -2.14
Pcdhac1-201ENSMUST00000007584 Gm45618A0A1B0GSA0 219 aa1.7□□□□□ -2.14
Pcdhac1-201ENSMUST00000007584 AhnakE9Q616 5656 aaKnown RBP1.64□□□□□ -2.15
Pcdhac1-201ENSMUST00000007584 Gm29735A0A1B0GT06 219 aa1.36□□□□□ -2.19
Pcdhac1-201ENSMUST00000007584 Krtap5-1Q64507 230 aa1.22□□□□□ -2.21
Pcdhac1-201ENSMUST00000007584 Gm4559A4IF42 199 aa1.03□□□□□ -2.24
Retrieved 80 of 22,080 RNA–protein pairs in 1099.9 ms