RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 ELNP15502 786 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 GRK4P32298 578 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 FLT3LGP49771 235 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 PLCD1P51178 756 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 RAB3GAP1Q15042 981 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 PROCA1Q8NCQ7 364 aaPredicted RBP12.48□□□□□ -0.41
SCN1A-222ENST00000642141 SDR42E1Q8WUS8 393 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 YTHDC1Q96MU7 727 aaKnown RBP12.48□□□□□ -0.41
SCN1A-222ENST00000642141 RIOK1Q9BRS2 568 aaKnown RBP12.48□□□□□ -0.41
SCN1A-222ENST00000642141 ARMT1Q9H993 441 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 PAG1Q9NWQ8 432 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 TMOD4Q9NZQ9 345 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 ZBTB21Q9ULJ3 1066 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 SLC45A1Q9Y2W3 748 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 SIPA1L1O43166 1804 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 TCRBV5S4A2TA0A5A2 114 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 PRKAB2O43741 272 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 CYP2D6P10635 497 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 PRMT2P55345 433 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 BACE1P56817 501 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 TSHZ3Q63HK5 1081 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 LCORLQ8N3X6 602 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 P2RX7Q99572 595 aaKnown RBP12.47□□□□□ -0.41
SCN1A-222ENST00000642141 WDR18Q9BV38 432 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 LRRCC1Q9C099 1032 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 MCM9Q9NXL9 1143 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 SERPINB13Q9UIV8 391 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 PNMA3Q9UL41 463 aa12.47□□□□□ -0.41
SCN1A-222ENST00000642141 USP17L10C9JJH3 530 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 ADCY3O60266 1144 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 CCL5P13501 91 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 ATP5JP18859 108 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 IRX3P78415 501 aaPredicted RBP12.46□□□□□ -0.41
SCN1A-222ENST00000642141 PABPC4Q13310 644 aaKnown RBP eCLIP12.46□□□□□ -0.41
SCN1A-222ENST00000642141 CERKLQ49MI3 558 aaPredicted RBP12.46□□□□□ -0.41
SCN1A-222ENST00000642141 SH3D19Q5HYK7 790 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 TTC6Q86TZ1 520 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 FEZ1Q99689 392 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 HAUS7Q99871 368 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 TBC1D2Q9BYX2 928 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 CRNKL1Q9BZJ0 848 aaKnown RBP12.46□□□□□ -0.41
SCN1A-222ENST00000642141 EMILIN3Q9NT22 766 aa12.46□□□□□ -0.41
SCN1A-222ENST00000642141 CDK5RAP2Q96SN8 1893 aa12.46□□□□□ -0.42
SCN1A-222ENST00000642141 CYP2D7A0A087X1C5 515 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 SMIM22K7EJ46 135 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 MPHOSPH10O00566 681 aaKnown RBP12.45□□□□□ -0.42
SCN1A-222ENST00000642141 MBD4O95243 580 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 SHMT1P34896 483 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 ABCB5Q2M3G0 1257 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 PRPF38BQ5VTL8 546 aaKnown RBP12.45□□□□□ -0.42
SCN1A-222ENST00000642141 TATDN1Q6P1N9 297 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 CERS3Q8IU89 383 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 SLC44A5Q8NCS7 719 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 ACER1Q8TDN7 264 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.45□□□□□ -0.42
SCN1A-222ENST00000642141 DYNLL2Q96FJ2 89 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 RNF208Q9H0X6 261 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 UNC93B1Q9H1C4 597 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 ATAD5Q96QE3 1844 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 PTPRFP10586 1907 aa12.45□□□□□ -0.42
SCN1A-222ENST00000642141 C19orf81C9J6K1 198 aa12.44□□□□□ -0.42
SCN1A-222ENST00000642141 IGSF3O75054 1194 aa12.44□□□□□ -0.42
SCN1A-222ENST00000642141 ADD2P35612 726 aa12.44□□□□□ -0.42
SCN1A-222ENST00000642141 GCLCP48506 637 aaPredicted RBP12.44□□□□□ -0.42
SCN1A-222ENST00000642141 COA7Q96BR5 231 aa12.44□□□□□ -0.42
SCN1A-222ENST00000642141 PAGR1Q9BTK6 254 aa12.44□□□□□ -0.42
SCN1A-222ENST00000642141 EHD4Q9H223 541 aa12.44□□□□□ -0.42
SCN1A-222ENST00000642141 TXNRD2Q9NNW7 524 aa12.44□□□□□ -0.42
SCN1A-222ENST00000642141 DCP1AQ9NPI6 582 aaPredicted RBP12.44□□□□□ -0.42
SCN1A-222ENST00000642141 PCDHB15Q9Y5E8 787 aa12.44□□□□□ -0.42
SCN1A-222ENST00000642141 KIAA0100Q14667 2235 aaKnown RBP12.43□□□□□ -0.42
SCN1A-222ENST00000642141 PDE4DIPQ5VU43 2346 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 INHAP05111 366 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 HERVK_113P62684 666 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 SEPT2Q15019 361 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 FAM110CQ1W6H9 321 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 USP17L2Q6R6M4 530 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 SLAIN1Q8ND83 568 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.43□□□□□ -0.42
SCN1A-222ENST00000642141 CABP5Q9NP86 173 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 FOCADQ5VW36 1801 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 MYH1P12882 1939 aa12.43□□□□□ -0.42
SCN1A-222ENST00000642141 HOXA7P31268 230 aaPredicted RBP12.42□□□□□ -0.42
SCN1A-222ENST00000642141 GUCY1A2P33402 732 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 UBXN2AP68543 259 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 Q3C1V9 767 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 TMED8Q6PL24 325 aaPredicted RBP12.42□□□□□ -0.42
SCN1A-222ENST00000642141 POTEEQ6S8J3 1075 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 CLEC10AQ8IUN9 316 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 STK11IPQ8N1F8 1099 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 GPRC5AQ8NFJ5 357 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 SHISA4Q96DD7 197 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 DCTPP1Q9H773 170 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 ECHDC1Q9NTX5 307 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 GINM1Q9NU53 330 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 RBPJLQ9UBG7 517 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 SLC4A4Q9Y6R1 1079 aa12.42□□□□□ -0.42
SCN1A-222ENST00000642141 USP17L12C9JPN9 530 aa12.41□□□□□ -0.42
SCN1A-222ENST00000642141 USP17L21D6R901 530 aa12.41□□□□□ -0.42
SCN1A-222ENST00000642141 MGAMO43451 1857 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms