RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 NID2Q14112 1375 aa17.49■□□□□ 0.39
TRIM3-215ENST00000639856 RANBP6O60518 1105 aaKnown RBP17.48■□□□□ 0.39
TRIM3-215ENST00000639856 FGRP09769 529 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 IARSP41252 1262 aaKnown RBP17.48■□□□□ 0.39
TRIM3-215ENST00000639856 PPP4CP60510 307 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 SART3Q15020 963 aaKnown RBP17.48■□□□□ 0.39
TRIM3-215ENST00000639856 SYNE3Q6ZMZ3 975 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 CERS5Q8N5B7 392 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 TBC1D22AQ8WUA7 517 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 TGFBRAP1Q8WUH2 860 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 MRPS27Q92552 414 aaKnown RBP17.48■□□□□ 0.39
TRIM3-215ENST00000639856 PHKBQ93100 1093 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 AIFM3Q96NN9 605 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 UBAC1Q9BSL1 405 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 ARPP21Q9UBL0 812 aaPredicted RBP17.48■□□□□ 0.39
TRIM3-215ENST00000639856 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.48■□□□□ 0.39
TRIM3-215ENST00000639856 TNKSO95271 1327 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 IGSF3O75054 1194 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 BAG3O95817 575 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 LDHCP07864 332 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 ZNF165P49910 485 aa17.48■□□□□ 0.39
TRIM3-215ENST00000639856 SPTLC2O15270 562 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 SF3A1Q15459 793 aaKnown RBP17.47■□□□□ 0.39
TRIM3-215ENST00000639856 SBK1Q52WX2 424 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 KRT40Q6A162 431 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 FMR1NBQ8N0W7 255 aaPredicted RBP17.47■□□□□ 0.39
TRIM3-215ENST00000639856 NOL10Q9BSC4 688 aaKnown RBP17.47■□□□□ 0.39
TRIM3-215ENST00000639856 DNAJC25Q9H1X3 360 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 STK36Q9NRP7 1315 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 GPR75-ASB3A0A0A6YYF3 556 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 ERICH2A1L162 156 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 F8W031 263 aaPredicted RBP17.47■□□□□ 0.39
TRIM3-215ENST00000639856 SEC23AQ15436 765 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 ANO1Q5XXA6 986 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 MAPKAPK5Q8IW41 473 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 DBNDD1Q9H9R9 158 aa17.47■□□□□ 0.39
TRIM3-215ENST00000639856 ADAMTSL1Q8N6G6 1762 aa17.46■□□□□ 0.39
TRIM3-215ENST00000639856 TMTC2Q8N394 836 aa17.46■□□□□ 0.39
TRIM3-215ENST00000639856 ENAHQ8N8S7 591 aaPredicted RBP17.46■□□□□ 0.39
TRIM3-215ENST00000639856 KCNQ5Q9NR82 932 aa17.46■□□□□ 0.39
TRIM3-215ENST00000639856 NMT2O60551 498 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 IFNAR1P17181 557 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 KIAA2012Q0VF49 1180 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 FAM47AQ5JRC9 791 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 C12orf60Q5U649 245 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 DYNLL2Q96FJ2 89 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 ZSCAN10Q96SZ4 725 aaPredicted RBP17.45■□□□□ 0.38
TRIM3-215ENST00000639856 SAP30BPQ9UHR5 308 aaKnown RBP17.45■□□□□ 0.38
TRIM3-215ENST00000639856 SCN9AQ15858 1988 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 GAKO14976 1311 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 DLEC1Q9Y238 1755 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 UBE2Q2LH0YL09 131 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 ORC4O43929 436 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 RHBDL3P58872 404 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 SSRP1Q08945 709 aaKnown RBP17.45■□□□□ 0.38
TRIM3-215ENST00000639856 TRIM29Q14134 588 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 STX1AQ16623 288 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 ZNF654Q8IZM8 581 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 C7orf43Q8WVR3 580 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 CNKSR1Q969H4 720 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 DAGLAQ9Y4D2 1042 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 C10orf71Q711Q0 1435 aa17.45■□□□□ 0.38
TRIM3-215ENST00000639856 DDX60LQ5H9U9 1706 aaKnown RBP17.45■□□□□ 0.38
TRIM3-215ENST00000639856 A0A1B0GVL5 298 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 G3V3G9 751 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 FMNL1O95466 1100 aaPredicted RBP17.44■□□□□ 0.38
TRIM3-215ENST00000639856 PCP11498 1178 aaKnown RBP17.44■□□□□ 0.38
TRIM3-215ENST00000639856 DCAF8Q5TAQ9 597 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 FAM163AQ96GL9 167 aaPredicted RBP17.44■□□□□ 0.38
TRIM3-215ENST00000639856 ZNF830Q96NB3 372 aaPredicted RBP17.44■□□□□ 0.38
TRIM3-215ENST00000639856 EYA3Q99504 573 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 TTC12Q9H892 705 aaPredicted RBP17.44■□□□□ 0.38
TRIM3-215ENST00000639856 TAOK2Q9UL54 1235 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 U2AF2P26368 475 aaKnown RBP eCLIP17.44■□□□□ 0.38
TRIM3-215ENST00000639856 NDUFA8P51970 172 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 RCAN1P53805 252 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 SLC39A14Q15043 492 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 TEX11Q8IYF3 940 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 NUP133Q8WUM0 1156 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 SLC26A6Q9BXS9 759 aa17.44■□□□□ 0.38
TRIM3-215ENST00000639856 SNED1Q8TER0 1413 aa17.43■□□□□ 0.38
TRIM3-215ENST00000639856 GOLGA6L6A8MZA4 724 aa17.43■□□□□ 0.38
TRIM3-215ENST00000639856 TPM3P06753 285 aa17.43■□□□□ 0.38
TRIM3-215ENST00000639856 SLC3A2P08195 630 aaKnown RBP17.43■□□□□ 0.38
TRIM3-215ENST00000639856 PLCD1P51178 756 aa17.43■□□□□ 0.38
TRIM3-215ENST00000639856 GNL2Q13823 731 aaKnown RBP17.43■□□□□ 0.38
TRIM3-215ENST00000639856 RTN1Q16799 776 aa17.43■□□□□ 0.38
TRIM3-215ENST00000639856 CMTR1Q8N1G2 835 aaKnown RBP17.43■□□□□ 0.38
TRIM3-215ENST00000639856 WASF1Q92558 559 aa17.43■□□□□ 0.38
TRIM3-215ENST00000639856 TTF2Q9UNY4 1162 aaKnown RBP17.43■□□□□ 0.38
TRIM3-215ENST00000639856 FOCADQ5VW36 1801 aa17.43■□□□□ 0.38
TRIM3-215ENST00000639856 FLT1P17948 1338 aa17.42■□□□□ 0.38
TRIM3-215ENST00000639856 SCNN1DP51172 638 aa17.42■□□□□ 0.38
TRIM3-215ENST00000639856 PDE4BQ07343 736 aa17.42■□□□□ 0.38
TRIM3-215ENST00000639856 IQCB1Q15051 598 aa17.42■□□□□ 0.38
TRIM3-215ENST00000639856 AXDND1Q5T1B0 1012 aaPredicted RBP17.42■□□□□ 0.38
TRIM3-215ENST00000639856 IQCA1Q86XH1 822 aa17.42■□□□□ 0.38
TRIM3-215ENST00000639856 SLF2Q8IX21 1173 aa17.42■□□□□ 0.38
TRIM3-215ENST00000639856 SLC44A5Q8NCS7 719 aa17.42■□□□□ 0.38
TRIM3-215ENST00000639856 SDF4Q9BRK5 362 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms