RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PRKAB2O43741 272 aa21.31■■□□□ 1
CLN3-263ENST00000637871 FGRP09769 529 aa21.31■■□□□ 1
CLN3-263ENST00000637871 EPS15P42566 896 aa21.31■■□□□ 1
CLN3-263ENST00000637871 CTDSPL2Q05D32 466 aa21.31■■□□□ 1
CLN3-263ENST00000637871 MICALL2Q8IY33 904 aa21.31■■□□□ 1
CLN3-263ENST00000637871 MIGA1Q8NAN2 632 aa21.31■■□□□ 1
CLN3-263ENST00000637871 KCNG4Q8TDN1 519 aa21.31■■□□□ 1
CLN3-263ENST00000637871 NSUN4Q96CB9 384 aaKnown RBP21.31■■□□□ 1
CLN3-263ENST00000637871 CRNKL1Q9BZJ0 848 aaKnown RBP21.31■■□□□ 1
CLN3-263ENST00000637871 TNMDQ9H2S6 317 aa21.31■■□□□ 1
CLN3-263ENST00000637871 PCDHAC2Q9Y5I4 1007 aa21.31■■□□□ 1
CLN3-263ENST00000637871 DTNBO60941 627 aa21.3■■□□□ 1
CLN3-263ENST00000637871 EGFRP00533 1210 aa21.3■■□□□ 1
CLN3-263ENST00000637871 SLC3A2P08195 630 aaKnown RBP21.3■■□□□ 1
CLN3-263ENST00000637871 IFNAR1P17181 557 aa21.3■■□□□ 1
CLN3-263ENST00000637871 YY1P25490 414 aa21.3■■□□□ 1
CLN3-263ENST00000637871 TRIM29Q14134 588 aa21.3■■□□□ 1
CLN3-263ENST00000637871 TBC1D22AQ8WUA7 517 aa21.3■■□□□ 1
CLN3-263ENST00000637871 PGBD1Q96JS3 809 aa21.3■■□□□ 1
CLN3-263ENST00000637871 NMRK2Q9NPI5 230 aa21.3■■□□□ 1
CLN3-263ENST00000637871 POLR3EQ9NVU0 708 aa21.3■■□□□ 1
CLN3-263ENST00000637871 TTF2Q9UNY4 1162 aaKnown RBP21.3■■□□□ 1
CLN3-263ENST00000637871 ESPNB1AK53 854 aa21.29■■□□□ 1
CLN3-263ENST00000637871 POTECB2RU33 542 aa21.29■■□□□ 1
CLN3-263ENST00000637871 GSTO1P78417 241 aa21.29■■□□□ 1
CLN3-263ENST00000637871 AGBL3Q8NEM8 1001 aa21.29■■□□□ 1
CLN3-263ENST00000637871 UBAC1Q9BSL1 405 aa21.29■■□□□ 1
CLN3-263ENST00000637871 DACT1Q9NYF0 836 aa21.29■■□□□ 1
CLN3-263ENST00000637871 GPRC5DQ9NZD1 345 aa21.29■■□□□ 1
CLN3-263ENST00000637871 CNOT7Q9UIV1 285 aaKnown RBP21.29■■□□□ 1
CLN3-263ENST00000637871 MAST2Q6P0Q8 1798 aa21.29■■□□□ 1
CLN3-263ENST00000637871 MYO3BQ8WXR4 1341 aa21.29■■□□□ 1
CLN3-263ENST00000637871 A0A1W2PQ27 194 aa21.29■■□□□ 1
CLN3-263ENST00000637871 A0A1W2PQ64 194 aa21.29■■□□□ 1
CLN3-263ENST00000637871 A0A1W2PQD8 194 aa21.29■■□□□ 1
CLN3-263ENST00000637871 LDHBP07195 334 aaKnown RBP21.29■■□□□ 1
CLN3-263ENST00000637871 LIG1P18858 919 aa21.29■■□□□ 1
CLN3-263ENST00000637871 FKBP1AP62942 108 aaKnown RBP21.29■■□□□ 1
CLN3-263ENST00000637871 SSRP1Q08945 709 aaKnown RBP21.29■■□□□ 1
CLN3-263ENST00000637871 DIXDC1Q155Q3 683 aa21.29■■□□□ 1
CLN3-263ENST00000637871 SBK1Q52WX2 424 aa21.29■■□□□ 1
CLN3-263ENST00000637871 CCDC73Q6ZRK6 1079 aa21.29■■□□□ 1
CLN3-263ENST00000637871 TRIM22Q8IYM9 498 aa21.29■■□□□ 1
CLN3-263ENST00000637871 ZNF384Q8TF68 577 aa21.29■■□□□ 1
CLN3-263ENST00000637871 L3MBTL3Q96JM7 780 aaPredicted RBP21.29■■□□□ 1
CLN3-263ENST00000637871 ALG1Q9BT22 464 aa21.29■■□□□ 1
CLN3-263ENST00000637871 USP17L8P0C7I0 530 aa21.28■■□□□ 1
CLN3-263ENST00000637871 RPS12P25398 132 aaKnown RBP21.28■■□□□ 1
CLN3-263ENST00000637871 NTRK3Q16288 839 aa21.28■■□□□ 1
CLN3-263ENST00000637871 ADALQ6DHV7 355 aa21.28■■□□□ 1
CLN3-263ENST00000637871 SAMD7Q7Z3H4 446 aa21.28■■□□□ 1
CLN3-263ENST00000637871 USP28Q96RU2 1077 aa21.28■■□□□ 1
CLN3-263ENST00000637871 RRAGCQ9HB90 399 aa21.28■■□□□ 1
CLN3-263ENST00000637871 FMNL1O95466 1100 aaPredicted RBP21.27■■□□□ 1
CLN3-263ENST00000637871 LDHCP07864 332 aa21.27■■□□□ 1
CLN3-263ENST00000637871 CALM1P0DP23 149 aa21.27■■□□□ 1
CLN3-263ENST00000637871 CALM2P0DP24 149 aa21.27■■□□□ 1
CLN3-263ENST00000637871 CALM3P0DP25 149 aa21.27■■□□□ 1
CLN3-263ENST00000637871 CLCN1P35523 988 aa21.27■■□□□ 1
CLN3-263ENST00000637871 MECOMQ03112 1051 aa21.27■■□□□ 1
CLN3-263ENST00000637871 TBC1D10BQ4KMP7 808 aaPredicted RBP21.27■■□□□ 1
CLN3-263ENST00000637871 RBM26Q5T8P6 1007 aaKnown RBP21.27■■□□□ 1
CLN3-263ENST00000637871 TRPM4Q8TD43 1214 aa21.27■■□□□ 1
CLN3-263ENST00000637871 TOMM22Q9NS69 142 aa21.27■■□□□ 1
CLN3-263ENST00000637871 CCDC39Q9UFE4 941 aa21.27■■□□□ 1
CLN3-263ENST00000637871 MYH15Q9Y2K3 1946 aa21.27■■□□□ 1
CLN3-263ENST00000637871 LMOD1P29536 600 aaPredicted RBP21.26■□□□□ 0.99
CLN3-263ENST00000637871 KIF23Q02241 960 aaPredicted RBP21.26■□□□□ 0.99
CLN3-263ENST00000637871 RTN1Q16799 776 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 MYSM1Q5VVJ2 828 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 ADGRA1Q86SQ6 560 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 MICU3Q86XE3 530 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 IQCA1Q86XH1 822 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 DZIP1Q86YF9 867 aaKnown RBP21.26■□□□□ 0.99
CLN3-263ENST00000637871 DPF2Q92785 391 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 ARPP21Q9UBL0 812 aaPredicted RBP21.26■□□□□ 0.99
CLN3-263ENST00000637871 SCN4AP35499 1836 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 MYH2Q9UKX2 1941 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 ORC4O43929 436 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 RRP12Q5JTH9 1297 aaKnown RBP21.26■□□□□ 0.99
CLN3-263ENST00000637871 ZSCAN30Q86W11 494 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 RNF214Q8ND24 703 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 HACL1Q9UJ83 578 aa21.26■□□□□ 0.99
CLN3-263ENST00000637871 MINDY4BA8MYZ0 360 aa21.25■□□□□ 0.99
CLN3-263ENST00000637871 CDC27P30260 824 aa21.25■□□□□ 0.99
CLN3-263ENST00000637871 SASS6Q6UVJ0 657 aa21.25■□□□□ 0.99
CLN3-263ENST00000637871 CCAR1Q8IX12 1150 aaKnown RBP21.25■□□□□ 0.99
CLN3-263ENST00000637871 JMYQ8N9B5 988 aa21.25■□□□□ 0.99
CLN3-263ENST00000637871 LINC00301Q8NCQ3 95 aa21.25■□□□□ 0.99
CLN3-263ENST00000637871 FAM217BQ9NTX9 383 aaPredicted RBP21.25■□□□□ 0.99
CLN3-263ENST00000637871 ZNF280AP59817 542 aaPredicted RBP21.24■□□□□ 0.99
CLN3-263ENST00000637871 GUCY1B3Q02153 619 aa21.24■□□□□ 0.99
CLN3-263ENST00000637871 FAM160A1Q05DH4 1040 aa21.24■□□□□ 0.99
CLN3-263ENST00000637871 STK38Q15208 465 aa21.24■□□□□ 0.99
CLN3-263ENST00000637871 SAFBQ15424 915 aaKnown RBP eCLIP21.24■□□□□ 0.99
CLN3-263ENST00000637871 SF3A1Q15459 793 aaKnown RBP21.24■□□□□ 0.99
CLN3-263ENST00000637871 CCDC178Q5BJE1 867 aa21.24■□□□□ 0.99
CLN3-263ENST00000637871 OGFOD1Q8N543 542 aa21.24■□□□□ 0.99
CLN3-263ENST00000637871 FAM200AQ8TCP9 573 aa21.24■□□□□ 0.99
CLN3-263ENST00000637871 SDR42E1Q8WUS8 393 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms