RNA–Protein interactions for RNA: ENST00000635193.1

COL11A1-211, Transcript of collagen type XI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL11A1, Length 5,289 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-211ENST00000635193 V9GY48 417 aaPredicted RBP12.99□□□□□ -0.33
COL11A1-211ENST00000635193 PFKFB1P16118 471 aa12.99□□□□□ -0.33
COL11A1-211ENST00000635193 CCT5P48643 541 aa12.99□□□□□ -0.33
COL11A1-211ENST00000635193 MYSM1Q5VVJ2 828 aa12.99□□□□□ -0.33
COL11A1-211ENST00000635193 KLHL7Q8IXQ5 586 aa12.99□□□□□ -0.33
COL11A1-211ENST00000635193 NELFBQ8WX92 580 aa12.99□□□□□ -0.33
COL11A1-211ENST00000635193 ZNF622Q969S3 477 aaKnown RBP eCLIP12.99□□□□□ -0.33
COL11A1-211ENST00000635193 KRT71Q3SY84 523 aa12.99□□□□□ -0.33
COL11A1-211ENST00000635193 METTL22Q9BUU2 404 aaPredicted RBP12.99□□□□□ -0.33
COL11A1-211ENST00000635193 TSKSQ9UJT2 592 aa12.99□□□□□ -0.33
COL11A1-211ENST00000635193 TRAPPC8Q9Y2L5 1435 aa12.99□□□□□ -0.33
COL11A1-211ENST00000635193 EPB41P11171 864 aaKnown RBP12.98□□□□□ -0.33
COL11A1-211ENST00000635193 PDE1CQ14123 709 aaPredicted RBP12.98□□□□□ -0.33
COL11A1-211ENST00000635193 BEND3Q5T5X7 828 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 VPS52Q8N1B4 723 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 SUCLG2Q96I99 432 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 DESI2Q9BSY9 194 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 IMPG2Q9BZV3 1241 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 TRIM4Q9C037 500 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 PLCB1Q9NQ66 1216 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 EIF4G3O43432 1585 aaKnown RBP12.98□□□□□ -0.33
COL11A1-211ENST00000635193 TXNDC9O14530 226 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 SF3A3Q12874 501 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL11A1-211ENST00000635193 PICALMQ13492 652 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 TTC6Q86TZ1 520 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 USP28Q96RU2 1077 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 TRIM31Q9BZY9 425 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 TPCN1Q9ULQ1 816 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 RABGAP1Q9Y3P9 1069 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 IBTKQ9P2D0 1353 aaPredicted RBP12.98□□□□□ -0.33
COL11A1-211ENST00000635193 PPP2R5AQ15172 486 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 TPX2Q9ULW0 747 aaKnown RBP12.98□□□□□ -0.33
COL11A1-211ENST00000635193 NDUFB9Q9Y6M9 179 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 A0A087WUV0 522 aaPredicted RBP12.98□□□□□ -0.33
COL11A1-211ENST00000635193 CEP104O60308 925 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 RASSF2P50749 326 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 PTH1RQ03431 593 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 RAB3IPQ96QF0 476 aaPredicted RBP12.98□□□□□ -0.33
COL11A1-211ENST00000635193 TCHPQ9BT92 498 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 ZSWIM6Q9HCJ5 1215 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 SERTAD1Q9UHV2 236 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 WDR62O43379 1518 aa12.98□□□□□ -0.33
COL11A1-211ENST00000635193 E7EWF7 191 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 SPOPO43791 374 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 TNFAIP3P21580 790 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 MYL10Q9BUA6 226 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 TNRQ92752 1358 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 XAGE2Q96GT9 111 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 NIP7Q9Y221 180 aaKnown RBP eCLIP12.97□□□□□ -0.33
COL11A1-211ENST00000635193 LRRD1A4D1F6 860 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 PSDA5PKW4 1024 aaPredicted RBP12.97□□□□□ -0.33
COL11A1-211ENST00000635193 ATP1A2P50993 1020 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 SUDS3Q9H7L9 328 aaPredicted RBP12.97□□□□□ -0.33
COL11A1-211ENST00000635193 ARMT1Q9H993 441 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 PARP1P09874 1014 aaKnown RBP12.97□□□□□ -0.33
COL11A1-211ENST00000635193 STAG1Q8WVM7 1258 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 DSCC1Q9BVC3 393 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 FAM204AQ9H8W3 233 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 DDX41Q9UJV9 622 aaKnown RBP12.97□□□□□ -0.33
COL11A1-211ENST00000635193 CD2BP2O95400 341 aaKnown RBP12.97□□□□□ -0.33
COL11A1-211ENST00000635193 NLRP3Q96P20 1036 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 ODF2LQ9ULJ1 636 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 KCNJ14Q9UNX9 436 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 FRMD4BQ9Y2L6 1034 aa12.97□□□□□ -0.33
COL11A1-211ENST00000635193 KIAA0232Q92628 1395 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 RNF40O75150 1001 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 E2F4Q16254 413 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 RABGGTAQ92696 567 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 NAP1L4Q99733 375 aaKnown RBP12.96□□□□□ -0.33
COL11A1-211ENST00000635193 NRBP1Q9UHY1 535 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.96□□□□□ -0.33
COL11A1-211ENST00000635193 ADAMTS12P58397 1594 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 CDC25BP30305 580 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 PLS1Q14651 629 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 CLUL1Q15846 466 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 PHLDB3Q6NSJ2 640 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 DZIP3Q86Y13 1208 aaKnown RBP12.96□□□□□ -0.33
COL11A1-211ENST00000635193 TRMT2AQ8IZ69 625 aaKnown RBP12.96□□□□□ -0.33
COL11A1-211ENST00000635193 DCAF5Q96JK2 942 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 IFIH1Q9BYX4 1025 aaKnown RBP12.96□□□□□ -0.33
COL11A1-211ENST00000635193 SPATA31E1Q6ZUB1 1445 aa12.96□□□□□ -0.33
COL11A1-211ENST00000635193 YTHDC2Q9H6S0 1430 aaKnown RBP12.96□□□□□ -0.33
COL11A1-211ENST00000635193 UHRF1BP1LA0JNW5 1464 aa12.96□□□□□ -0.34
COL11A1-211ENST00000635193 CCNT1O60563 726 aaKnown RBP12.96□□□□□ -0.34
COL11A1-211ENST00000635193 PLBD2Q8NHP8 589 aa12.96□□□□□ -0.34
COL11A1-211ENST00000635193 TDRD7Q8NHU6 1098 aaKnown RBP12.96□□□□□ -0.34
COL11A1-211ENST00000635193 NCKAP5LQ9HCH0 1330 aa12.96□□□□□ -0.34
COL11A1-211ENST00000635193 FAM135BQ49AJ0 1406 aa12.96□□□□□ -0.34
COL11A1-211ENST00000635193 SMIM24O75264 130 aa12.96□□□□□ -0.34
COL11A1-211ENST00000635193 CLTAP09496 248 aa12.96□□□□□ -0.34
COL11A1-211ENST00000635193 UBL4BQ8N7F7 174 aa12.96□□□□□ -0.34
COL11A1-211ENST00000635193 SEC31AO94979 1220 aaKnown RBP12.95□□□□□ -0.34
COL11A1-211ENST00000635193 STAMQ92783 540 aa12.95□□□□□ -0.34
COL11A1-211ENST00000635193 ZNF274Q96GC6 653 aaPredicted RBP12.95□□□□□ -0.34
COL11A1-211ENST00000635193 BLZF1Q9H2G9 400 aa12.95□□□□□ -0.34
COL11A1-211ENST00000635193 TXNDC16Q9P2K2 825 aa12.95□□□□□ -0.34
COL11A1-211ENST00000635193 RPSAP08865 295 aaKnown RBP12.95□□□□□ -0.34
COL11A1-211ENST00000635193 RPS6KA1Q15418 735 aa12.95□□□□□ -0.34
COL11A1-211ENST00000635193 UAP1Q16222 522 aaPredicted RBP12.95□□□□□ -0.34
COL11A1-211ENST00000635193 WDR78Q5VTH9 848 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms