RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 INPP5BP32019 993 aa21.63■■□□□ 1.05
CLN3-239ENST00000628023 FOXP4Q8IVH2 680 aaPredicted RBP21.63■■□□□ 1.05
CLN3-239ENST00000628023 BRI3BPQ8WY22 251 aa21.63■■□□□ 1.05
CLN3-239ENST00000628023 ZKSCAN4Q969J2 545 aaPredicted RBP21.63■■□□□ 1.05
CLN3-239ENST00000628023 EFCC1Q9HA90 598 aa21.63■■□□□ 1.05
CLN3-239ENST00000628023 SERPINB13Q9UIV8 391 aa21.63■■□□□ 1.05
CLN3-239ENST00000628023 GSG1L2A8MUP6 293 aa21.62■■□□□ 1.05
CLN3-239ENST00000628023 MFAP1P55081 439 aaKnown RBP21.62■■□□□ 1.05
CLN3-239ENST00000628023 SNAPC2Q13487 334 aa21.62■■□□□ 1.05
CLN3-239ENST00000628023 EHD4Q9H223 541 aa21.62■■□□□ 1.05
CLN3-239ENST00000628023 ARPP21Q9UBL0 812 aaPredicted RBP21.62■■□□□ 1.05
CLN3-239ENST00000628023 ZNF112Q9UJU3 913 aa21.62■■□□□ 1.05
CLN3-239ENST00000628023 CCDC171Q6TFL3 1326 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 BAZ2AQ9UIF9 1905 aaKnown RBP21.61■■□□□ 1.05
CLN3-239ENST00000628023 PATL2C9JE40 543 aaKnown RBP21.61■■□□□ 1.05
CLN3-239ENST00000628023 USP17L12C9JPN9 530 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 USP17L21D6R901 530 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 CYP2D6P10635 497 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 MAP3K10Q02779 954 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 GIMAP6Q6P9H5 292 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 PICK1Q9NRD5 415 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 PTPN22Q9Y2R2 807 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 SNCAIPQ9Y6H5 919 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 SIPA1L1O43166 1804 aa21.61■■□□□ 1.05
CLN3-239ENST00000628023 TNRC18O15417 2968 aaPredicted RBP21.61■■□□□ 1.05
CLN3-239ENST00000628023 PHF20L1A8MW92 1017 aa21.6■■□□□ 1.05
CLN3-239ENST00000628023 PLCD1P51178 756 aa21.6■■□□□ 1.05
CLN3-239ENST00000628023 ZNF589Q86UQ0 364 aaPredicted RBP21.6■■□□□ 1.05
CLN3-239ENST00000628023 SCYL3Q8IZE3 742 aa21.6■■□□□ 1.05
CLN3-239ENST00000628023 NAPBQ9H115 298 aa21.6■■□□□ 1.05
CLN3-239ENST00000628023 EPB41L4AQ9HCS5 686 aaPredicted RBP21.6■■□□□ 1.05
CLN3-239ENST00000628023 ZCCHC17Q9NP64 241 aaKnown RBP21.6■■□□□ 1.05
CLN3-239ENST00000628023 CYP2D7A0A087X1C5 515 aa21.59■■□□□ 1.05
CLN3-239ENST00000628023 CTNND1O60716 968 aaKnown RBP21.59■■□□□ 1.05
CLN3-239ENST00000628023 PPIL2Q13356 520 aa21.59■■□□□ 1.05
CLN3-239ENST00000628023 BMP2KLQ5H9B9 411 aa21.59■■□□□ 1.05
CLN3-239ENST00000628023 NOL9Q5SY16 702 aaKnown RBP21.59■■□□□ 1.05
CLN3-239ENST00000628023 CTR9Q6PD62 1173 aa21.59■■□□□ 1.05
CLN3-239ENST00000628023 METTL16Q86W50 562 aaKnown RBP21.59■■□□□ 1.05
CLN3-239ENST00000628023 IFNL3Q8IZI9 196 aa21.59■■□□□ 1.05
CLN3-239ENST00000628023 RUFY2Q8WXA3 655 aa21.59■■□□□ 1.05
CLN3-239ENST00000628023 DNAJC18Q9H819 358 aa21.59■■□□□ 1.05
CLN3-239ENST00000628023 MINDY4BA8MYZ0 360 aa21.58■■□□□ 1.05
CLN3-239ENST00000628023 PPATQ06203 517 aa21.58■■□□□ 1.05
CLN3-239ENST00000628023 C12orf60Q5U649 245 aa21.58■■□□□ 1.05
CLN3-239ENST00000628023 FAM43AQ8N2R8 423 aa21.58■■□□□ 1.05
CLN3-239ENST00000628023 IRF6O14896 467 aa21.57■■□□□ 1.04
CLN3-239ENST00000628023 EVX2Q03828 476 aa21.57■■□□□ 1.04
CLN3-239ENST00000628023 KIF22Q14807 665 aa21.57■■□□□ 1.04
CLN3-239ENST00000628023 VPS53Q5VIR6 699 aa21.57■■□□□ 1.04
CLN3-239ENST00000628023 SWAP70Q9UH65 585 aa21.57■■□□□ 1.04
CLN3-239ENST00000628023 RAD50Q92878 1312 aa21.56■■□□□ 1.04
CLN3-239ENST00000628023 DOCK1Q14185 1865 aa21.56■■□□□ 1.04
CLN3-239ENST00000628023 GDF11O95390 407 aa21.56■■□□□ 1.04
CLN3-239ENST00000628023 CHMLP26374 656 aa21.56■■□□□ 1.04
CLN3-239ENST00000628023 SBK1Q52WX2 424 aa21.56■■□□□ 1.04
CLN3-239ENST00000628023 DYNLL2Q96FJ2 89 aa21.56■■□□□ 1.04
CLN3-239ENST00000628023 BTBD19C9JJ37 291 aa21.55■■□□□ 1.04
CLN3-239ENST00000628023 TLR2O60603 784 aa21.55■■□□□ 1.04
CLN3-239ENST00000628023 CAP2P40123 477 aa21.55■■□□□ 1.04
CLN3-239ENST00000628023 CERKLQ49MI3 558 aaPredicted RBP21.55■■□□□ 1.04
CLN3-239ENST00000628023 PRPF38BQ5VTL8 546 aaKnown RBP21.55■■□□□ 1.04
CLN3-239ENST00000628023 NBPF11Q86T75 865 aa21.55■■□□□ 1.04
CLN3-239ENST00000628023 SLC44A5Q8NCS7 719 aa21.55■■□□□ 1.04
CLN3-239ENST00000628023 SLC34A2O95436 690 aa21.54■■□□□ 1.04
CLN3-239ENST00000628023 SLC3A2P08195 630 aaKnown RBP21.54■■□□□ 1.04
CLN3-239ENST00000628023 HSPD1P10809 573 aaKnown RBP21.54■■□□□ 1.04
CLN3-239ENST00000628023 SHMT1P34896 483 aa21.54■■□□□ 1.04
CLN3-239ENST00000628023 GABPAQ06546 454 aa21.54■■□□□ 1.04
CLN3-239ENST00000628023 STK11IPQ8N1F8 1099 aa21.54■■□□□ 1.04
CLN3-239ENST00000628023 TAOK2Q9UL54 1235 aa21.54■■□□□ 1.04
CLN3-239ENST00000628023 MPHOSPH10O00566 681 aaKnown RBP21.53■■□□□ 1.04
CLN3-239ENST00000628023 FOXP2O15409 715 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 ASNSP08243 561 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 PTPRAP18433 802 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 RRP1BQ14684 758 aaKnown RBP21.53■■□□□ 1.04
CLN3-239ENST00000628023 TATDN1Q6P1N9 297 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 CASC1Q6TDU7 716 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 C16orf86Q6ZW13 317 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 ARMC5Q96C12 935 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 CABP5Q9NP86 173 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.53■■□□□ 1.04
CLN3-239ENST00000628023 ZHX2Q9Y6X8 837 aa21.53■■□□□ 1.04
CLN3-239ENST00000628023 SMIM22K7EJ46 135 aa21.52■■□□□ 1.04
CLN3-239ENST00000628023 CDK8P49336 464 aa21.52■■□□□ 1.04
CLN3-239ENST00000628023 PPARAQ07869 468 aa21.52■■□□□ 1.04
CLN3-239ENST00000628023 ABCB5Q2M3G0 1257 aa21.52■■□□□ 1.04
CLN3-239ENST00000628023 TMEM106CQ9BVX2 250 aa21.52■■□□□ 1.04
CLN3-239ENST00000628023 GINM1Q9NU53 330 aa21.52■■□□□ 1.04
CLN3-239ENST00000628023 ZBTB21Q9ULJ3 1066 aa21.52■■□□□ 1.04
CLN3-239ENST00000628023 ATAD5Q96QE3 1844 aa21.52■■□□□ 1.04
CLN3-239ENST00000628023 ROBO3Q96MS0 1386 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 CDC45O75419 566 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 GNRH1P01148 92 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 GH2P01242 217 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 ALX1Q15699 326 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 SLC9C1Q4G0N8 1177 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 ANKRD23Q86SG2 305 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 CCDC84Q86UT8 332 aaPredicted RBP21.51■■□□□ 1.03
CLN3-239ENST00000628023 MKNK2Q9HBH9 465 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms