RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 APOBEC3FQ8IUX4 373 aaKnown RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 MB21D2Q8IYB1 491 aaPredicted RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 ZNF444Q8N0Y2 327 aaPredicted RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 FBXL16Q8N461 479 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 ZC3H15Q8WU90 426 aaKnown RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 ESR2Q92731 530 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 TTC14Q96N46 770 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 DEFB129Q9H1M3 183 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 TAF1DQ9H5J8 278 aaPredicted RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 MKNK2Q9HBH9 465 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 SWAP70Q9UH65 585 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 SERPINB13Q9UIV8 391 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 ASTN2O75129 1339 aaPredicted RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 CNTNAP1P78357 1384 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 UTRNP46939 3433 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 MYH13Q9UKX3 1938 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 TBC1D12O60347 775 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 RANBP6O60518 1105 aaKnown RBP9.47□□□□□ -0.89
CPNE3-209ENST00000620393 KDM4AO75164 1064 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 PRDM1O75626 825 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 MCM2P49736 904 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 MAP3K10Q02779 954 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 RRP12Q5JTH9 1297 aaKnown RBP9.47□□□□□ -0.89
CPNE3-209ENST00000620393 CYB5R4Q7L1T6 521 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 PNMA8AQ86V59 439 aaPredicted RBP9.47□□□□□ -0.89
CPNE3-209ENST00000620393 NKX2-3Q8TAU0 364 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 CSRNP1Q96S65 589 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 MTA3Q9BTC8 594 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 TMEM39BQ9GZU3 492 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 TOMM22Q9NS69 142 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 NEDD4P46934 1319 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 WDR19Q8NEZ3 1342 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 PITPNM2Q9BZ72 1349 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 ATRNL1Q5VV63 1379 aa9.47□□□□□ -0.89
CPNE3-209ENST00000620393 MYH2Q9UKX2 1941 aa9.46□□□□□ -0.89
CPNE3-209ENST00000620393 PRC1O43663 620 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 VEGFAP15692 232 aaPredicted RBP9.46□□□□□ -0.9
CPNE3-209ENST00000620393 RASA1P20936 1047 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 ANTXR2P58335 489 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 TFAP4Q01664 338 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 ANKRD1Q15327 319 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 TATDN1Q6P1N9 297 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 Q6ZUG5 572 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 CHST3Q7LGC8 479 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 CRACR2BQ8N4Y2 399 aaPredicted RBP9.46□□□□□ -0.9
CPNE3-209ENST00000620393 SLC44A5Q8NCS7 719 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 IGDCC4Q8TDY8 1250 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 DCPSQ96C86 337 aaKnown RBP9.46□□□□□ -0.9
CPNE3-209ENST00000620393 TMEM87BQ96K49 555 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 CCDC17Q96LX7 622 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 TCEANC2Q96MN5 208 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 TEPSINQ96N21 525 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 AGXT2Q9BYV1 514 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 RRAGCQ9HB90 399 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 TCP11L1Q9NUJ3 509 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 GGA3Q9NZ52 723 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 HERC5Q9UII4 1024 aaKnown RBP9.46□□□□□ -0.9
CPNE3-209ENST00000620393 SCAF8Q9UPN6 1271 aaKnown RBP9.46□□□□□ -0.9
CPNE3-209ENST00000620393 PPP2R3BQ9Y5P8 575 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 ZNF646O15015 1829 aaPredicted RBP9.46□□□□□ -0.9
CPNE3-209ENST00000620393 SBF1O95248 1867 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 CCDC88AQ3V6T2 1871 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 MYH7P12883 1935 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 ROBO3Q96MS0 1386 aa9.46□□□□□ -0.9
CPNE3-209ENST00000620393 MAST2Q6P0Q8 1798 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 PSME4Q14997 1843 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 CD2BP2O95400 341 aaKnown RBP9.45□□□□□ -0.9
CPNE3-209ENST00000620393 SLURP2P0DP57 97 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 SHMT1P34896 483 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 AK2P54819 239 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 PDAP1Q13442 181 aaKnown RBP9.45□□□□□ -0.9
CPNE3-209ENST00000620393 BECN1Q14457 450 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 CCDC178Q5BJE1 867 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 FAM47AQ5JRC9 791 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 TMTC2Q8N394 836 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 NEDD1Q8NHV4 660 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 ANKS1AQ92625 1134 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 TRIM34Q9BYJ4 488 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 LRRC2Q9BYS8 371 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 TBC1D2Q9BYX2 928 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 OCEL1Q9H607 264 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 DNAJC18Q9H819 358 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 LIMCH1Q9UPQ0 1083 aa9.45□□□□□ -0.9
CPNE3-209ENST00000620393 COL2A1P02458 1487 aaPredicted RBP9.45□□□□□ -0.9
CPNE3-209ENST00000620393 DICER1Q9UPY3 1922 aaKnown RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 TSPY2A6NKD2 308 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 IFIT3O14879 490 aaKnown RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 TSPY3P0CV98 308 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 TSPY8P0CW00 308 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 LIFRP42702 1097 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 EVCP57679 992 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 IRX5P78411 483 aaPredicted RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 FGD1P98174 961 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 MKRN3Q13064 507 aaKnown RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 TOB2Q14106 344 aaPredicted RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 SART3Q15020 963 aaKnown RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 SUPT20HL1Q3ZLR7 823 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 CERKLQ49MI3 558 aaPredicted RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 EAPPQ56P03 285 aaPredicted RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 NBPF12Q5TAG4 269 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms