RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 AHCYL1O43865 530 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 NR1I2O75469 434 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 POLD1P28340 1107 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 CAPRIN2Q6IMN6 1127 aaKnown RBP11.55□□□□□ -0.56
VPS39-214ENST00000614932 RMI1Q9H9A7 625 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 BTG4Q9NY30 223 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS39-214ENST00000614932 FESP07332 822 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 RPSAP08865 295 aaKnown RBP11.55□□□□□ -0.56
VPS39-214ENST00000614932 SLC8A1P32418 973 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 TBC1D5Q92609 795 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 DHX58Q96C10 678 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 NEUROD6Q96NK8 337 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 WDR24Q96S15 920 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 SCAND2PQ9GZW5 306 aaPredicted RBP11.55□□□□□ -0.56
VPS39-214ENST00000614932 VCPKMTQ9H867 229 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 ASAP1Q9ULH1 1129 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 AOX1Q06278 1338 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 OVOS2A0A0G2JMS6 1433 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 A0A0D9SFI3 127 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 VPS37CA5D8V6 355 aaPredicted RBP11.55□□□□□ -0.56
VPS39-214ENST00000614932 GOLGA6L9A6NEM1 432 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 WDHD1O75717 1129 aaPredicted RBP11.55□□□□□ -0.56
VPS39-214ENST00000614932 TUBBP07437 444 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 GJB2P29033 226 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 AK2P54819 239 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 PTPN12Q05209 780 aaKnown RBP11.55□□□□□ -0.56
VPS39-214ENST00000614932 CCDC181Q5TID7 509 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 MFN1Q8IWA4 741 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 B4GALNT2Q8NHY0 566 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 FAM76AQ8TAV0 307 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 HOOK2Q96ED9 719 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 JAKMIP1Q96N16 626 aaKnown RBP11.55□□□□□ -0.56
VPS39-214ENST00000614932 TAF6LQ9Y6J9 622 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 COL18A1P39060 1754 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 PCDH11XQ9BZA7 1347 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 PCDH11YQ9BZA8 1340 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 EIF3HO15372 352 aaKnown RBP eCLIP11.54□□□□□ -0.56
VPS39-214ENST00000614932 RANBP1P43487 201 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 PPFIA1Q13136 1202 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 SLC30A9Q6PML9 568 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 YTHDF3Q7Z739 585 aaKnown RBP11.54□□□□□ -0.56
VPS39-214ENST00000614932 PARP9Q8IXQ6 854 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 NUP133Q8WUM0 1156 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 DBNDD2Q9BQY9 259 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 ZSWIM4Q9H7M6 989 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 SLC40A1Q9NP59 571 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 RGL1Q9NZL6 768 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 LIMCH1Q9UPQ0 1083 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 SAMM50Q9Y512 469 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 DCCP43146 1447 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 LARGE1O95461 756 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 OATP04181 439 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 CWF19L1Q69YN2 538 aaKnown RBP11.54□□□□□ -0.56
VPS39-214ENST00000614932 CCDC129Q6ZRS4 1044 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 MICALCLQ6ZW33 695 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 KIFC2Q96AC6 838 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 SPATA32Q96LK8 384 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 SEC62Q99442 399 aaKnown RBP11.54□□□□□ -0.56
VPS39-214ENST00000614932 CAPS2Q9BXY5 557 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 TSGA10Q9BZW7 698 aa11.54□□□□□ -0.56
VPS39-214ENST00000614932 DBNLQ9UJU6 430 aaKnown RBP11.54□□□□□ -0.56
VPS39-214ENST00000614932 SIPA1L3O60292 1781 aaPredicted RBP11.53□□□□□ -0.56
VPS39-214ENST00000614932 PPP1R12BO60237 982 aaPredicted RBP11.53□□□□□ -0.56
VPS39-214ENST00000614932 CUTAO60888 179 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 PDHBP11177 359 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 PDE6BP35913 854 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 TIMM10P62072 90 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 DDX46Q7L014 1031 aaKnown RBP11.53□□□□□ -0.56
VPS39-214ENST00000614932 SYNE4Q8N205 404 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 OSBPL9Q96SU4 736 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 TPCN1Q9ULQ1 816 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.53□□□□□ -0.56
VPS39-214ENST00000614932 UTYO14607 1347 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 SOS2Q07890 1332 aaPredicted RBP11.53□□□□□ -0.56
VPS39-214ENST00000614932 SCN11AQ9UI33 1791 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 TPP2P29144 1249 aaPredicted RBP11.53□□□□□ -0.56
VPS39-214ENST00000614932 VSNL1P62760 191 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 E2F5Q15329 346 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 BRAPQ7Z569 592 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 ZNF589Q86UQ0 364 aaPredicted RBP11.53□□□□□ -0.56
VPS39-214ENST00000614932 AOPEPQ8N6M6 819 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 ACRBPQ8NEB7 543 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 PLBD2Q8NHP8 589 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 EVI5LQ96CN4 794 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 XPO4Q9C0E2 1151 aaKnown RBP11.53□□□□□ -0.56
VPS39-214ENST00000614932 SLC39A2Q9NP94 309 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 ANO10Q9NW15 660 aa11.53□□□□□ -0.56
VPS39-214ENST00000614932 ZEB2O60315 1214 aa11.52□□□□□ -0.56
VPS39-214ENST00000614932 USP4Q13107 963 aa11.52□□□□□ -0.56
VPS39-214ENST00000614932 MIS18BP1Q6P0N0 1132 aa11.52□□□□□ -0.56
VPS39-214ENST00000614932 FAM228AQ86W67 206 aa11.52□□□□□ -0.56
VPS39-214ENST00000614932 FAM81AQ8TBF8 368 aa11.52□□□□□ -0.56
VPS39-214ENST00000614932 PPP2R2CQ9Y2T4 447 aa11.52□□□□□ -0.56
VPS39-214ENST00000614932 CPDO75976 1380 aa11.52□□□□□ -0.57
VPS39-214ENST00000614932 SPDYE3A6NKU9 549 aa11.52□□□□□ -0.57
VPS39-214ENST00000614932 RFX5P48382 616 aaPredicted RBP11.52□□□□□ -0.57
VPS39-214ENST00000614932 LRRC24Q50LG9 513 aa11.52□□□□□ -0.57
VPS39-214ENST00000614932 DNAJC10Q8IXB1 793 aa11.52□□□□□ -0.57
VPS39-214ENST00000614932 CEP57L1Q8IYX8 460 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms