RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ATP8B2P98198 1209 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 MAPKAPK5Q8IW41 473 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 CRACR2BQ8N4Y2 399 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-212ENST00000597995 GPRC5AQ8NFJ5 357 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 SSH3Q8TE77 659 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 SOCS4Q8WXH5 440 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 P2RX7Q99572 595 aaKnown RBP15.32■□□□□ 0.04
TRIM28-212ENST00000597995 NUDT12Q9BQG2 462 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 DBNDD2Q9BQY9 259 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 TRIM34Q9BYJ4 488 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 NBPF3Q9H094 633 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 DNAJC18Q9H819 358 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 FLT1P17948 1338 aa15.32■□□□□ 0.04
TRIM28-212ENST00000597995 BMP8BP34820 402 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 HERVK_113P62684 666 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 JAG1P78504 1218 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 OS9Q13438 667 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-212ENST00000597995 MAP3K21Q5TCX8 1036 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 ADGRA1Q86SQ6 560 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 TRMT44Q8IYL2 757 aaKnown RBP15.31■□□□□ 0.04
TRIM28-212ENST00000597995 DIS3LQ8TF46 1054 aaKnown RBP15.31■□□□□ 0.04
TRIM28-212ENST00000597995 GTF3C2Q8WUA4 911 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-212ENST00000597995 TRIB2Q92519 343 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 STAP2Q9UGK3 403 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 OGDHLQ9ULD0 1010 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 PALD1Q9ULE6 856 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 SIPA1L1O43166 1804 aa15.31■□□□□ 0.04
TRIM28-212ENST00000597995 SURF6O75683 361 aaKnown RBP15.3■□□□□ 0.04
TRIM28-212ENST00000597995 HLA-DOAP06340 250 aa15.3■□□□□ 0.04
TRIM28-212ENST00000597995 MAPK4P31152 587 aa15.3■□□□□ 0.04
TRIM28-212ENST00000597995 TRIM32Q13049 653 aa15.3■□□□□ 0.04
TRIM28-212ENST00000597995 CERS3Q8IU89 383 aa15.3■□□□□ 0.04
TRIM28-212ENST00000597995 GDF15Q99988 308 aa15.3■□□□□ 0.04
TRIM28-212ENST00000597995 C1orf115Q9H7X2 142 aa15.3■□□□□ 0.04
TRIM28-212ENST00000597995 RBPJLQ9UBG7 517 aa15.3■□□□□ 0.04
TRIM28-212ENST00000597995 ZBTB21Q9ULJ3 1066 aa15.3■□□□□ 0.04
TRIM28-212ENST00000597995 NOP58Q9Y2X3 529 aaKnown RBP15.3■□□□□ 0.04
TRIM28-212ENST00000597995 PLXNB2O15031 1838 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 MAST2Q6P0Q8 1798 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 CYP2B6P20813 491 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 ZAP70P43403 619 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 MNX1P50219 401 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-212ENST00000597995 TMED8Q6PL24 325 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-212ENST00000597995 USP17L2Q6R6M4 530 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 C11orf49Q9H6J7 331 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 TXNRD2Q9NNW7 524 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 ALPK3Q96L96 1907 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 FOCADQ5VW36 1801 aa15.29■□□□□ 0.04
TRIM28-212ENST00000597995 GDF11O95390 407 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 ERVK-9P63128 1117 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 ERVK-24P63145 666 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 PDE3AQ14432 1141 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 ITPRIPQ8IWB1 547 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 FTSJ3Q8IY81 847 aaKnown RBP15.28■□□□□ 0.04
TRIM28-212ENST00000597995 PANK1Q8TE04 598 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 USP6NLQ92738 828 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 PIH1D3Q9NQM4 214 aaKnown RBP15.28■□□□□ 0.04
TRIM28-212ENST00000597995 EMILIN3Q9NT22 766 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 CDK5RAP2Q96SN8 1893 aa15.28■□□□□ 0.04
TRIM28-212ENST00000597995 SOX1O00570 391 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-212ENST00000597995 PRKAR2AP13861 404 aaKnown RBP15.27■□□□□ 0.04
TRIM28-212ENST00000597995 CYP7A1P22680 504 aa15.27■□□□□ 0.04
TRIM28-212ENST00000597995 Q3C1V9 767 aa15.27■□□□□ 0.04
TRIM28-212ENST00000597995 MORN1Q5T089 497 aa15.27■□□□□ 0.04
TRIM28-212ENST00000597995 GPR153Q6NV75 609 aa15.27■□□□□ 0.04
TRIM28-212ENST00000597995 TATDN1Q6P1N9 297 aa15.27■□□□□ 0.04
TRIM28-212ENST00000597995 CCAR1Q8IX12 1150 aaKnown RBP15.27■□□□□ 0.04
TRIM28-212ENST00000597995 C7orf61Q8IZ16 206 aa15.27■□□□□ 0.04
TRIM28-212ENST00000597995 C12orf42Q96LP6 360 aa15.27■□□□□ 0.04
TRIM28-212ENST00000597995 SAP30BPQ9UHR5 308 aaKnown RBP15.27■□□□□ 0.04
TRIM28-212ENST00000597995 DBNLQ9UJU6 430 aaKnown RBP15.27■□□□□ 0.04
TRIM28-212ENST00000597995 PEX10O60683 326 aa15.26■□□□□ 0.03
TRIM28-212ENST00000597995 ZKSCAN1P17029 563 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-212ENST00000597995 RGS2P41220 211 aa15.26■□□□□ 0.03
TRIM28-212ENST00000597995 DYNLL1P63167 89 aaKnown RBP15.26■□□□□ 0.03
TRIM28-212ENST00000597995 SHROOM1Q2M3G4 852 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-212ENST00000597995 GPR142Q7Z601 462 aa15.26■□□□□ 0.03
TRIM28-212ENST00000597995 PLEKHH3Q7Z736 793 aa15.26■□□□□ 0.03
TRIM28-212ENST00000597995 EHD4Q9H223 541 aa15.26■□□□□ 0.03
TRIM28-212ENST00000597995 RABGAP1Q9Y3P9 1069 aa15.26■□□□□ 0.03
TRIM28-212ENST00000597995 MYO5AQ9Y4I1 1855 aaKnown RBP15.26■□□□□ 0.03
TRIM28-212ENST00000597995 LAMA3Q16787 3333 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L15C9J2P7 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L13C9JLJ4 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L11C9JVI0 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L18D6R9N7 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L22D6RA61 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L17D6RBQ6 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L19D6RCP7 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L20D6RJB6 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 IDH1O75874 414 aaKnown RBP15.25■□□□□ 0.03
TRIM28-212ENST00000597995 GH2P01242 217 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP5P45974 858 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 CACNB2Q08289 660 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-212ENST00000597995 USP17L24Q0WX57 530 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 POTEEQ6S8J3 1075 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 TTC6Q86TZ1 520 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 EAF2Q96CJ1 260 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-212ENST00000597995 LRCH3Q96II8 777 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 CCDC8Q9H0W5 538 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms