RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 LAMA3Q16787 3333 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 C19orf81C9J6K1 198 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 CYP2E1P05181 493 aaPredicted RBP12.25□□□□□ -0.45
LIG1-209ENST00000596104 PRKAR2AP13861 404 aaKnown RBP12.25□□□□□ -0.45
LIG1-209ENST00000596104 PLCG2P16885 1265 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 POLA2Q14181 598 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 TNNI3KQ59H18 835 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 ATF7IPQ6VMQ6 1270 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 MAPKAPK5Q8IW41 473 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 GPRC5AQ8NFJ5 357 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 NUDT12Q9BQG2 462 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 DBNDD2Q9BQY9 259 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 NOL10Q9BSC4 688 aaKnown RBP12.25□□□□□ -0.45
LIG1-209ENST00000596104 GINM1Q9NU53 330 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 TMOD4Q9NZQ9 345 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 ZBTB21Q9ULJ3 1066 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 FPGT-TNNI3KV9GXZ4 949 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 PFASO15067 1338 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 DOCK3Q8IZD9 2030 aa12.25□□□□□ -0.45
LIG1-209ENST00000596104 USP17L10C9JJH3 530 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 IPO8O15397 1037 aaKnown RBP12.24□□□□□ -0.45
LIG1-209ENST00000596104 GDF11O95390 407 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 COL6A1P12109 1028 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 MAPK4P31152 587 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 Q3C1V9 767 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 GPR153Q6NV75 609 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 SLC17A8Q8NDX2 589 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 ZNF512BQ96KM6 892 aaPredicted RBP12.24□□□□□ -0.45
LIG1-209ENST00000596104 PORCNQ9H237 461 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 EMILIN3Q9NT22 766 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 PALD1Q9ULE6 856 aa12.24□□□□□ -0.45
LIG1-209ENST00000596104 SIPA1L1O43166 1804 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 IGSF3O75054 1194 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 BCAR3O75815 825 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 ZKSCAN1P17029 563 aaPredicted RBP12.23□□□□□ -0.45
LIG1-209ENST00000596104 SYN1P17600 705 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 MAGEA10P43363 369 aaPredicted RBP12.23□□□□□ -0.45
LIG1-209ENST00000596104 ZAP70P43403 619 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 ERVK-9P63128 1117 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 ERVK-24P63145 666 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 CACNB2Q08289 660 aaPredicted RBP12.23□□□□□ -0.45
LIG1-209ENST00000596104 LRIT3Q3SXY7 679 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 TTC39AQ5SRH9 613 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 MORN1Q5T089 497 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 LHX8Q68G74 356 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 TRMT44Q8IYL2 757 aaKnown RBP12.23□□□□□ -0.45
LIG1-209ENST00000596104 CRACR2BQ8N4Y2 399 aaPredicted RBP12.23□□□□□ -0.45
LIG1-209ENST00000596104 CLUAP1Q96AJ1 413 aa12.23□□□□□ -0.45
LIG1-209ENST00000596104 PIH1D3Q9NQM4 214 aaKnown RBP12.23□□□□□ -0.45
LIG1-209ENST00000596104 ALPK3Q96L96 1907 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 DLL1O00548 723 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 DYNLL1P63167 89 aaKnown RBP12.22□□□□□ -0.45
LIG1-209ENST00000596104 PDE3AQ14432 1141 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 CCL14Q16627 93 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 CCDC158Q5M9N0 1113 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 GPR142Q7Z601 462 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 SSH3Q8TE77 659 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 GTF3C2Q8WUA4 911 aaPredicted RBP12.22□□□□□ -0.45
LIG1-209ENST00000596104 C12orf42Q96LP6 360 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 SAP30BPQ9UHR5 308 aaKnown RBP12.22□□□□□ -0.45
LIG1-209ENST00000596104 PLXNB2O15031 1838 aa12.22□□□□□ -0.45
LIG1-209ENST00000596104 CNMDO75829 334 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 GH2P01242 217 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 HLA-DOAP06340 250 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 CCND3P30281 292 aaPredicted RBP12.21□□□□□ -0.45
LIG1-209ENST00000596104 RGS2P41220 211 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 TATDN1Q6P1N9 297 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 USP17L2Q6R6M4 530 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 PLEKHH3Q7Z736 793 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 TDHQ8IZJ6 230 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 TMEM57Q8N5G2 664 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 FRAT1Q92837 279 aaPredicted RBP12.21□□□□□ -0.45
LIG1-209ENST00000596104 APBA2Q99767 749 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 PAGR1Q9BTK6 254 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 TRIM34Q9BYJ4 488 aa12.21□□□□□ -0.45
LIG1-209ENST00000596104 DBNLQ9UJU6 430 aaKnown RBP12.21□□□□□ -0.45
LIG1-209ENST00000596104 CYP7A1P22680 504 aa12.2□□□□□ -0.46
LIG1-209ENST00000596104 ATP8B2P98198 1209 aa12.2□□□□□ -0.46
LIG1-209ENST00000596104 MAP2K5Q13163 448 aa12.2□□□□□ -0.46
LIG1-209ENST00000596104 LRRC26Q2I0M4 334 aa12.2□□□□□ -0.46
LIG1-209ENST00000596104 Q7L0L9 218 aa12.2□□□□□ -0.46
LIG1-209ENST00000596104 DEFB123Q8N688 67 aa12.2□□□□□ -0.46
LIG1-209ENST00000596104 TLR7Q9NYK1 1049 aaKnown RBP12.2□□□□□ -0.46
LIG1-209ENST00000596104 NOP58Q9Y2X3 529 aaKnown RBP12.2□□□□□ -0.46
LIG1-209ENST00000596104 RABGAP1Q9Y3P9 1069 aa12.2□□□□□ -0.46
LIG1-209ENST00000596104 ATAD5Q96QE3 1844 aa12.2□□□□□ -0.46
LIG1-209ENST00000596104 DDX60LQ5H9U9 1706 aaKnown RBP12.2□□□□□ -0.46
LIG1-209ENST00000596104 SURF6O75683 361 aaKnown RBP12.19□□□□□ -0.46
LIG1-209ENST00000596104 OS9Q13438 667 aaPredicted RBP12.19□□□□□ -0.46
LIG1-209ENST00000596104 CCAR1Q8IX12 1150 aaKnown RBP12.19□□□□□ -0.46
LIG1-209ENST00000596104 EAF2Q96CJ1 260 aaPredicted RBP12.19□□□□□ -0.46
LIG1-209ENST00000596104 UBE2OQ9C0C9 1292 aaKnown RBP12.19□□□□□ -0.46
LIG1-209ENST00000596104 KIAA1683Q9H0B3 1180 aa12.19□□□□□ -0.46
LIG1-209ENST00000596104 EHD4Q9H223 541 aa12.19□□□□□ -0.46
LIG1-209ENST00000596104 MTMR10Q9NXD2 777 aa12.19□□□□□ -0.46
LIG1-209ENST00000596104 MAST2Q6P0Q8 1798 aa12.19□□□□□ -0.46
LIG1-209ENST00000596104 COL6A3P12111 3177 aa12.19□□□□□ -0.46
LIG1-209ENST00000596104 USP17L15C9J2P7 530 aa12.18□□□□□ -0.46
LIG1-209ENST00000596104 USP17L13C9JLJ4 530 aa12.18□□□□□ -0.46
LIG1-209ENST00000596104 USP17L11C9JVI0 530 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms